4 results found Sort:

timbitz
Whippet.jl timbitz
21
109
mit
12
Lightweight and Fast; RNA-seq quantification at the event-level
rna-seq alternative-splicing
Created 2015-11-12
1,070 commits to master branch, last one about a year ago
nsalomonis
altanalyze nsalomonis
30
100
apache-2.0
16
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available fro...
python pagerank bam-files cell-cycle clustering rna-seq-data fastq-anaysis scrna-seq-data network-analysis pathway-analysis command-line-tool graphical-interface alternative-splicing marker-gene-analysis single-cell-splicing splicing-visualization bioinformatics-pipeline splicing-quantification cell-type-classification louvain-community-detection
Created 2015-08-08
237 commits to master branch, last one 2 years ago
VCCRI
Sierra VCCRI
17
49
gpl-3.0
9
Discover differential transcript usage from polyA-captured single cell RNA-seq data
sierra isoforms scrna-seq alternative-splicing alternative-polyadenylation
Created 2019-11-26
323 commits to master branch, last one about a year ago
nf-core
rnasplice nf-core
29
48
mit
150
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
rna nf-core rna-seq nextflow pipeline splicing workflow alternative-splicing
Created 2022-08-22
430 commits to master branch, last one 7 months ago