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Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
python
analysis
atac-seq
cell-cycle
clustering
single-cell
awesome-list
rna-seq-data
cell-clusters
bioinformatics
scrna-seq-data
gene-expression
cell-populations
data-integration
analysis-pipeline
data-visualization
rna-seq-experiments
cell-differentiation
dimensionality-reduction
gene-expression-profiles
Created
2016-06-29
795 commits to master branch, last one 26 days ago
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available fro...
python
pagerank
bam-files
cell-cycle
clustering
rna-seq-data
fastq-anaysis
scrna-seq-data
network-analysis
pathway-analysis
command-line-tool
graphical-interface
alternative-splicing
marker-gene-analysis
single-cell-splicing
splicing-visualization
bioinformatics-pipeline
splicing-quantification
cell-type-classification
louvain-community-detection
Created
2015-08-08
237 commits to master branch, last one 2 years ago
Coarse-graining of large single-cell RNA-seq data into metacells
Created
2020-06-23
236 commits to master branch, last one 8 months ago