4 results found Sort:

seandavi
awesome-single-cell seandavi
988
3.2k
mit
248
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
python analysis atac-seq cell-cycle clustering single-cell awesome-list rna-seq-data cell-clusters bioinformatics scrna-seq-data gene-expression cell-populations data-integration analysis-pipeline data-visualization rna-seq-experiments cell-differentiation dimensionality-reduction gene-expression-profiles
Created 2016-06-29
791 commits to master branch, last one 6 days ago
nsalomonis
altanalyze nsalomonis
30
99
apache-2.0
16
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available fro...
python pagerank bam-files cell-cycle clustering rna-seq-data fastq-anaysis scrna-seq-data network-analysis pathway-analysis command-line-tool graphical-interface alternative-splicing marker-gene-analysis single-cell-splicing splicing-visualization bioinformatics-pipeline splicing-quantification cell-type-classification louvain-community-detection
Created 2015-08-08
237 commits to master branch, last one 2 years ago
vandijklab
cell2sentence-ft vandijklab
14
84
other
5
Cell2Sentence turns scRNA-seq data into text for LLM training.
scrna-seq single-cell bioinformatics scrna-seq-data
Created 2023-09-14
10 commits to main branch, last one 2 months ago
GfellerLab
SuperCell GfellerLab
11
68
gpl-3.0
5
Coarse-graining of large single-cell RNA-seq data into metacells
r-package scrna-seq-data coarse-graining scrna-seq-analysis
Created 2020-06-23
236 commits to master branch, last one 4 months ago