6 results found Sort:

lh3
bwa lh3
557
1.5k
gpl-3.0
107
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
fm-index genomics bioinformatics sequence-alignment
Created 2011-01-14
968 commits to master branch, last one 7 months ago
seqan
seqan3 seqan
82
410
other
25
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
blast cpp20 fasta fastq seqan modern fm-index samtools cpp-concepts bioinformatics sequence-analysis sequence-alignment
Created 2016-04-04
6,794 commits to main branch, last one a day ago
femto-dev
femto femto-dev
25
104
lgpl-3.0
13
Sequence Indexing and Search
chapel search fm-index indexing compression bioinformatics information-retrieval compressed-suffix-array
Created 2013-02-20
212 commits to main branch, last one 13 days ago
lh3
ropebwt3 lh3
3
95
other
6
BWT construction and search
bwt fm-index bioinformatics
Created 2024-06-04
258 commits to master branch, last one 11 days ago
andreaferretti
cello andreaferretti
10
76
apache-2.0
19
A string library
strings fm-index succinct suffix-array wavelet-tree string-search burrows-wheeler-transform
Created 2017-01-31
141 commits to master branch, last one 3 years ago
lh3
ropebwt2 lh3
5
68
mit
11
Incremental construction of FM-index for DNA sequences
fm-index bioinformatics
Created 2013-08-02
184 commits to master branch, last one 5 months ago