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Build a partitioned pangenome graph from microbial genomes
Created
2017-10-20
2,215 commits to master branch, last one about a month ago
Constructing a pangenome gene graph
Created
2023-06-11
245 commits to main branch, last one 5 months ago
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
Created
2015-11-26
592 commits to master branch, last one about a month ago
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Created
2022-02-11
401 commits to main branch, last one a day ago
A bioinformatic toolkit to align genome assemblies into pangenome graphs
Created
2020-06-28
976 commits to master branch, last one about a year ago
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
Created
2020-11-08
693 commits to master branch, last one 6 months ago
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
Created
2020-02-19
347 commits to master branch, last one about a year ago
Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-lik...
Created
2021-03-09
626 commits to main branch, last one about a year ago
Long read aligner for cyclic and acyclic pangenome graphs
Created
2023-01-27
93 commits to main branch, last one about a year ago
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
Created
2023-01-23
241 commits to master branch, last one about a month ago