Search Results - RepositoryStats

scispacy allenai

228

1.7k

apache-2.0

52

A full spaCy pipeline and models for scientific/biomedical documents.

nlp spacy biomedical custom-pipes bioinformatics scientific-documents

Created 2018-09-24

1,066 commits to main branch, last one 27 days ago

visual-med-alpaca cambridgeltl

42

374

apache-2.0

16

Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.

biomedical multimodal foundation-model large-language-models biomedical-image-processing

Created 2023-04-11

61 commits to main branch, last one 9 months ago

awesome-bioie caufieldjh

33

355

cc0-1.0

20

🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

nlp awesome biomedical text-mining awesome-list bioinformatics biomedical-data biomedical-language medical-informatics information-extraction natural-language-processing

Created 2019-08-21

155 commits to main branch, last one 6 months ago

Med-PaLM kyegomez

49

336

mit

8

Towards Generalist Biomedical AI

gpt4 biomedical multimodal opensource deep-learning multimodality multimodal-deep-learning

Created 2023-07-31

118 commits to main branch, last one 10 months ago

BioxelNodes OmooLab

21

264

mit

6

For scientific volumetric data visualization in Blender.

voxel sciart volume blender biomedical visualization geometry-nodes scientific-visualization

Created 2024-04-15

112 commits to main branch, last one about a month ago

Mol-Instructions zjunlp

16

256

mit

7

[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models

llama dataset protein science datasets iclr2024 molecule resource biomedical generation instruction instructions ai-for-science mol-instruction instruction-following large-language-models natural-language-processing

Created 2023-04-12

210 commits to main branch, last one about a month ago

biocypher biocypher

31

228

mit

9

A unifying framework for biomedical research knowledge graphs

rdf sql rdfs neo4j ai-ready ontology framework biochatter biomedical postgresql bioinformatics knowledge-graph retrieval-augmented-generation

Created 2021-09-10

1,666 commits to main branch, last one about a month ago

SleepEEGNet MousaviSajad

73

224

unknown

4

SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach

cnn eeg rnn biomedical biosignals tensorflow deep-learning sleep-stage-scoring sequence-to-sequence

Created 2019-02-24

46 commits to master branch, last one 3 years ago

biograkn typedb

52

181

unknown

24

BioGrakn Knowledge Graph

biograkn biomedical bioinformatics knowledge-graph knowledge-discovery

This repository has been archived (exclude archived)

Created 2018-09-23

122 commits to master branch, last one 3 years ago

RepMode Correr-Zhou

1

166

other

3

[CVPR 2023 (Highlight)] Offical implementation of the paper "RepMode: Learning to Re-parameterize Diverse Experts for Subcellular Structure Prediction".

cvpr2023 biomedical deep-learning computer-vision dense-prediction machine-learning multi-task-learning

Created 2023-02-28

15 commits to main branch, last one about a year ago

MEDIAR Lee-Gihun

32

144

mit

5

(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

monai pytorch biomedical miscroscopy cell-biology neurips-2022 multi-modality multi-resolution cell-segmentation vision-transformer pytorch-segmentation instance-segmentation pytorch-implementation

Created 2022-11-16

79 commits to main branch, last one 8 months ago

SCIRun SCIInstitute

72

128

other

24

SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.

qt5 qt6 cmake python biomedical c-plus-plus open-source visualization linear-systems boost-libraries forward-problem mesh-generation inverse-problems dataflow-programming scientific-computing scientific-computations scientific-visualization

Created 2012-02-16

12,589 commits to master branch, last one 9 months ago

R-Deep-Learning dlab-berkeley

39

123

unknown

13

Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization

nlp keras cloudml biomedical tensorflow deep-learning

Created 2018-11-27

213 commits to main branch, last one 8 months ago

Bio-Epidemiology-NER dreji18

9

118

unknown

2

Recognize bio-medical entities from a text corpus

ner nlp biomedical epidemiology transformers

Created 2022-06-27

50 commits to main branch, last one about a year ago

medtype svjan5

11

116

apache-2.0

9

MedType: Improving Medical Entity Linking with Semantic Type Prediction

medical pytorch biomedical deep-learning entity-linking bert-as-service state-of-the-art

Created 2020-04-30

65 commits to master branch, last one 2 years ago

MicrobiomeBestPracticeReview grimmlab

38

110

mit

4

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

16s-rrna assembly pipeline biomedical microbiome metagenomics best-practices bioinformatics amplicon-sequencing microbiome-analysis microbiome-workflow

Created 2018-11-16

101 commits to master branch, last one 7 months ago

amazon-weak-ner-needle amzn

30

100

mit-0

5

Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data

ner bert biomedical weak-supervision distant-supervision weakly-supervised-learning biomedical-named-entity-recognition

This repository has been archived (exclude archived)

Created 2021-07-04

7 commits to main branch, last one about a year ago

typedb-bio typedb-osi

32

79

unknown

10

TypeDB Bio: Biomedical Knowledge Graph

biomedical bioinformatics drug-discovery knowledge-base knowledge-graph knowledge-discovery

Created 2020-04-17

103 commits to master branch, last one 6 months ago

trove som-shahlab

21

70

apache-2.0

6

Weakly supervised medical named entity classification

ner bert umls ontology biomedical pseudo-labeling weak-supervision umls-metathesaurus text-classification learning-with-noisy-labels weakly-supervised-learning

Created 2020-11-26

30 commits to main branch, last one 2 years ago

KeBioLM GanjinZero

5

65

unknown

3

Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]

nlp biomedical pre-training language-model

Created 2021-04-16

9 commits to main branch, last one about a year ago

GEANet-BioMed-Event-Extraction PlusLabNLP

12

60

mit

4

Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs

bert cord-19 covid-19 biomedical deep-learning event-extraction multitask-learning natural-language-processing

Created 2020-04-12

14 commits to master branch, last one 3 years ago

farabio tuttelikz

3

53

apache-2.0

4

:robot: PyTorch toolkit for biomedical imaging :heart:

models python pytorch datasets biomedical deep-learning biomedical-imaging

Created 2020-11-21

277 commits to main branch, last one 2 years ago

S3M BorgwardtLab

8

52

mit

6

A software package for statistically significant shapelet mining

shapelets biomedical time-series time-series-analysis biomedical-data-science time-series-analysis-tool significant-pattern-mining

Created 2018-03-05

325 commits to master branch, last one 2 years ago

BioBART GanjinZero

4

52

unknown

3

BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model [ACL-BioNLP 2022]

biomedical generative pretrained-language-model

Created 2022-03-02

25 commits to main branch, last one 2 years ago

wxECGAnalyzer GCY

22

52

mit

3

This project is for Electrocardiogram(ECG) signal algorithms design and validation, include preprocessing, QRS-Complex detection, embedded system validation, ECG segmentation, label your machine learn...

ecg signal stm32f4 labeling tompkins biomedical ecg-signal qrs-complex pan-tompkins qrs-detection chen-algorithm ecg-segmentation electrocardiogram adaptive-thresholding biomedical-engineering heart-rate-variability adaptive-threshold-algorithm biomedical-signal-processing

Created 2019-09-21

110 commits to master branch, last one 3 years ago

Atrial-Fibrillation-Detection-Blood-Pressure-Monitor-Oscillometric-Method- GCY

18

48

mit

4

Atrial Fibrillation Detection Blood Pressure Monitor (Oscillometric Method)

bpm stm32 stm32f4 pid-codes biomedical motor-drive pid-control blood-pressure mercury-manometer atrial-fibrillation biomedical-engineering blood-pressure-monitor blood-pressure-measurment biomedical-signal-processing atrial-fibrillation-detection

Created 2019-10-02

120 commits to master branch, last one 3 years ago

MrBiomics epigen

1

41

mit

5

MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses

r python modules recipes science genetics genomics research framework snakemake workflows automation biomedical epigenetics data-science bioinformatics next-generation-sequencing

Created 2022-03-28

88 commits to main branch, last one 5 days ago

fedbiomed fedbiomed

5

40

other

13

A collaborative learning framework for empowering biomedical research

ai clinical learning analytics federated biomedical collaborative

Created 2023-05-30

7,157 commits to develop branch, last one 5 days ago