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Tools for computational pathology
Created
2019-07-31
1,385 commits to master branch, last one about a month ago
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
Created
2018-08-28
449 commits to master branch, last one 19 days ago
Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.
Created
2023-04-11
61 commits to main branch, last one about a year ago
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
Created
2018-07-25
224 commits to master branch, last one 18 days ago
Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods
Created
2017-11-22
155 commits to master branch, last one 4 years ago
PyTorch Connectomics: segmentation toolbox for EM connectomics
Created
2019-03-27
1,038 commits to master branch, last one about a month ago
A generalizable application framework for segmentation, regression, and classification using PyTorch
Created
2021-02-26
9,632 commits to master branch, last one 6 days ago
A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
Created
2017-12-11
988 commits to master branch, last one about a year ago
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Created
2019-01-16
291 commits to master branch, last one 18 days ago
Read and write Neuroglancer datasets programmatically.
Created
2017-07-25
1,364 commits to master branch, last one 5 days ago
ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection
Created
2018-06-04
18 commits to master branch, last one 6 years ago
Open source Python library for building bioimage analysis pipelines
python
pytorch
denoising
segmentation
deep-learning
classification
computer-vision
medical-imaging
image-processing
machine-learning
object-detection
super-resolution
image-segmentation
instance-segmentation
semantic-segmentation
self-supervised-learning
biomedical-image-processing
convolutional-neural-networks
Created
2019-02-28
2,172 commits to master branch, last one 17 hours ago
Developing a UNet3D model for accurate MRI skull stripping using the Calgary Campinas 359 dataset, enhancing neuroimaging preprocessing workflows.
Created
2024-08-18
10 commits to main branch, last one 4 months ago
Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes
Created
2018-08-02
228 commits to master branch, last one 2 months ago
Scalable Optical Flow-based Image Montaging and Alignment
Created
2022-02-11
82 commits to main branch, last one about a month ago
UNet based model that segment retina to 8 layers in OCT images
Created
2022-06-20
18 commits to master branch, last one about a year ago
Marching Cubes & Mesh Simplification on multi-label 3D images.
Created
2019-04-29
145 commits to master branch, last one 17 days ago
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
Created
2021-05-30
152 commits to main branch, last one 2 years ago
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
Created
2019-01-16
165 commits to master branch, last one 3 months ago
Scientific Reports 2023
Created
2023-04-11
103 commits to main branch, last one about a month ago
A Python library for biomedical statistical shape and appearance modelling.
Created
2022-12-09
105 commits to main branch, last one 9 months ago