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Tools for computational pathology
Created
2019-07-31
1,011 commits to master branch, last one 2 months ago
Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.
Created
2023-04-11
61 commits to main branch, last one 3 months ago
Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)
Created
2018-08-28
395 commits to master branch, last one 4 days ago
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
Created
2018-07-25
215 commits to master branch, last one 8 days ago
Python based dashboard for real-time Electrical Impedance Tomography including image reconstruction using Back Projection, Graz Consensus and Gauss Newton methods
Created
2017-11-22
155 commits to master branch, last one 3 years ago
PyTorch Connectomics: segmentation toolbox for EM connectomics
Created
2019-03-27
1,008 commits to master branch, last one 7 days ago
A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
Created
2017-12-11
988 commits to master branch, last one 6 months ago
A generalizable application framework for segmentation, regression, and classification using PyTorch
Created
2021-02-26
8,752 commits to master branch, last one 26 days ago
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Created
2019-01-16
258 commits to master branch, last one 3 days ago
Read and write Neuroglancer datasets programmatically.
Created
2017-07-25
1,236 commits to master branch, last one 12 days ago
ISIC 2018: Skin Lesion Analysis Towards Melanoma Detection
Created
2018-06-04
18 commits to master branch, last one 5 years ago
Open source Python library for building bioimage analysis pipelines
python
pytorch
denoising
segmentation
deep-learning
classification
computer-vision
medical-imaging
image-processing
machine-learning
object-detection
super-resolution
image-segmentation
instance-segmentation
semantic-segmentation
self-supervised-learning
biomedical-image-processing
convolutional-neural-networks
Created
2019-02-28
1,622 commits to master branch, last one a day ago
Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes
Created
2018-08-02
225 commits to master branch, last one 2 months ago
Marching Cubes & Mesh Simplification on multi-label 3D images.
Created
2019-04-29
135 commits to master branch, last one 2 days ago
Scalable Optical Flow-based Image Montaging and Alignment
Created
2022-02-11
50 commits to main branch, last one 3 months ago
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
Created
2021-05-30
152 commits to main branch, last one about a year ago
Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
Created
2019-01-16
152 commits to master branch, last one a day ago
UNet based model that segment retina to 8 layers in OCT images
Created
2022-06-20
18 commits to master branch, last one about a year ago
Fracture Detection in Pediatric Wrist Trauma X-ray Images Using YOLOv8 Algorithm
Created
2023-04-11
93 commits to main branch, last one 9 days ago