14 results found Sort:

pycroscopy
pycroscopy pycroscopy
73
260
mit
32
Scientific analysis of nanoscale materials imaging data
afm fft stm atom stem raman imaging infrared scanning microscopy statistics spectroscopy visualization machine-learning materials-science signal-processing electron-microscopy atomic-force-microscopy scanning-probe-microscopy scanning-tunnelling-microscopy
Created 2016-06-18
4,051 commits to main branch, last one about a month ago
pycroscopy
atomai pycroscopy
41
202
mit
11
Deep and Machine Learning for Microscopy
imaging pytorch materials microscopy deep-learning jupyter-notebook machine-learning ensemble-learning materials-science electron-microscopy google-colaboratory deep-kernel-learning multivariate-analysis semantic-segmentation variational-autoencoders scanning-probe-microscopy fully-convolutional-networks
Created 2020-09-04
1,412 commits to master branch, last one 11 months ago
ELEKTRONN
elektronn3 ELEKTRONN
27
161
mit
17
A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biomedical image data
3d-cnn pytorch electron-microscopy semantic-segmentation 3d-convolutional-network biomedical-image-processing convolutional-neural-networks
Created 2017-12-11
988 commits to master branch, last one about a year ago
seung-lab
cloud-volume seung-lab
48
140
bsd-3-clause
29
Read and write Neuroglancer datasets programmatically.
s3 gcs mesh cloud numpy matrix python tensor big-data skeletons microscopy serverless large-image connectomics neuroglancer chunked-image volumetric-data microscopy-images electron-microscopy biomedical-image-processing
Created 2017-07-25
1,346 commits to master branch, last one 11 hours ago
LaurentRDC
scikit-ued LaurentRDC
20
137
gpl-3.0
9
Collection of algorithms and routines for (ultrafast) electron diffraction and scattering
python scikit science diffraction ultrafast-electron electron-microscopy
Created 2017-04-22
5,404 commits to master branch, last one 13 days ago
kuixu
awesome-cryoem kuixu
35
135
cc0-1.0
9
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
cryoem cryo-em 3d-denoise tomography density-map model-building 3d-reconstruction protein-structures electron-microscopy
Created 2016-07-21
83 commits to master branch, last one 4 years ago
axondeepseg
axondeepseg axondeepseg
32
117
mit
12
Axon/Myelin segmentation using Deep Learning
axon myelin histology neuropoly microscopy spinalcord segmentation deep-learning machine-learning electron-microscopy convolutional-neural-networks
Created 2016-09-26
785 commits to master branch, last one 5 days ago
LiberTEM
LiberTEM LiberTEM
67
113
mit
13
Open pixelated STEM framework
python data-processing image-processing electron-microscopy
Created 2018-01-10
4,399 commits to master branch, last one 23 days ago
phonchi
Computational-CryoEM phonchi
12
108
cc0-1.0
4
A curated list of awesome computational cryo-EM methods.
cryoem cryo-em structural-biology electron-microscopy computational-biology single-particle-analisys
Created 2020-06-23
133 commits to master branch, last one 3 months ago
instamatic-dev
instamatic instamatic-dev
30
58
bsd-3-clause
8
Python program for automated electron diffraction data collection
micro-ed automation data-collection electron-microscopy electron-diffraction serial-crystallography 3d-electron-diffraction
Created 2017-03-23
1,514 commits to main branch, last one 2 months ago
google-research
sofima google-research
13
57
apache-2.0
8
Scalable Optical Flow-based Image Montaging and Alignment
2d 3d 4d jax python3 microscopy connectomics alignment-algorithm electron-microscopy stitching-algorithm biomedical-image-processing
Created 2022-02-11
76 commits to main branch, last one 19 days ago
hyperspy
rosettasciio hyperspy
28
53
gpl-3.0
14
Python library for reading and writing scientific data format
image raman python hyperspy hyperspectral multi-dimensional scientific-formats electron-microscopy
Created 2022-07-22
3,897 commits to main branch, last one 5 days ago
BAMresearch
automatic-sem-image-segmentation BAMresearch
11
47
other
3
Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images
sem tem unet cyclegan simulation segmentation deep-learning neural-networks electron-microscopy
Created 2021-02-19
30 commits to master branch, last one 14 days ago
phonchi
Computational-CryoET phonchi
2
43
unknown
1
A curated list of awesome computational cryo-ET methods.
cryoet cryo-et structural-biology electron-microscopy computational-biology
Created 2023-01-14
31 commits to main branch, last one 3 months ago