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QuPath - Open-source bioimage analysis for research
Created
2016-08-28
4,103 commits to main branch, last one a day ago
A Python toolkit for pathology image analysis algorithms.
Created
2015-10-15
3,000 commits to master branch, last one 5 days ago
Powerful, open-source AI tools for digital pathology.
Created
2019-09-13
3,101 commits to master branch, last one about a month ago
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
Created
2021-01-19
20 commits to master branch, last one about a year ago
HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)
Created
2024-03-04
41 commits to main branch, last one 7 days ago
AI-based pathology predicts origins for cancers of unknown primary - Nature
Created
2020-06-19
26 commits to master branch, last one 3 years ago
Axon/Myelin segmentation using Deep Learning
Created
2016-09-26
775 commits to master branch, last one a day ago
The official deployment of the Digital Slide Archive and HistomicsTK.
Created
2015-12-29
814 commits to master branch, last one 4 days ago
Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
Created
2024-03-24
10 commits to main branch, last one 3 months ago
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Created
2021-05-31
69 commits to main branch, last one about a year ago
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
Created
2020-06-22
200 commits to main branch, last one about a month ago
Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
Created
2017-03-09
496 commits to master branch, last one 25 days ago
A pipeline to segment tissue from the background in histological images
Created
2018-11-14
141 commits to master branch, last one 4 years ago
A Girder plugin for pathology image annotations and analysis.
Created
2019-12-31
816 commits to master branch, last one 4 days ago
RandStainNA: Simple and efficient augmentations for histology [MICCAI 2022]
Created
2022-06-08
17 commits to master branch, last one about a year ago
Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometrial cancer from haematoxylin and eosin-stained whole-slide images...
Created
2022-06-22
22 commits to main branch, last one 10 months ago