81 results found Sort:

mne-tools
mne-python mne-tools
1.3k
2.7k
bsd-3-clause
83
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
eeg meg ecog python statistics neuroimaging neuroscience visualization machine-learning electrocorticography electroencephalography magnetoencephalography
Created 2011-01-28
18,173 commits to main branch, last one 14 hours ago
nitrain
nitrain nitrain
302
1.9k
agpl-3.0
49
Train AI models efficiently on medical images using any framework
keras pytorch neuroimaging deep-learning medical-imaging
Created 2017-03-01
399 commits to main branch, last one 4 months ago
Slicer
Slicer Slicer
555
1.7k
other
41
Multi-platform, free open source software for visualization and image computing.
qt itk nih vtk python kitware tcia-dac 3d-slicer 3d-printing c-plus-plus neuroimaging registration segmentation tractography medical-imaging image-processing computed-tomography image-guided-therapy medical-image-computing national-institutes-of-health
Created 2020-03-12
29,452 commits to main branch, last one 18 hours ago
DLTK
DLTK DLTK
405
1.4k
apache-2.0
101
Deep Learning Toolkit for Medical Image Analysis
ml cnn dltk python medical tensorflow data-science neuroimaging deep-learning dltk-model-zoo neural-network medical-imaging neural-networks machine-learning deep-neural-networks medical-image-processing
Created 2017-05-02
379 commits to master branch, last one 5 years ago
ANTsX
ANTs ANTsX
381
1.2k
apache-2.0
68
Advanced Normalization Tools (ANTs)
neuroimaging image-registration image-segmentation medical-image-processing
Created 2013-01-23
5,038 commits to master branch, last one about a month ago
nilearn
nilearn nilearn
601
1.2k
other
70
Machine learning for NeuroImaging in Python
fmri mvpa python decoding brain-mri neuroimaging brain-imaging machine-learning brain-connectivity
Created 2011-01-09
10,460 commits to main branch, last one 17 hours ago
rordenlab
dcm2niix rordenlab
228
893
other
38
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
gz dcm mri nii jpeg dicom nifti nitrc dcm2niix mricrogl research jpeg-image mri-images bids-format dicom-images neuroimaging neuroscience nifti-format
Created 2014-10-19
1,400 commits to master branch, last one 3 months ago
Slicer
SlicerGitSVNArchive Slicer
458
872
other
89
:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.
qt itk nih vtk python kitware tcia-dac 3d-slicer 3d-printing c-plus-plus neuroimaging registration segmentation tractography cross-platform medical-imaging image-processing image-guided-therapy medical-image-computing national-institutes-of-health
Created 2011-07-06
25,842 commits to master branch, last one 4 years ago
fieldtrip
fieldtrip fieldtrip
721
846
gpl-3.0
49
The MATLAB toolbox for MEG, EEG and iEEG analysis
eeg meg bids ecog ieeg seeg brain dipole matlab donders analysis fieldtrip beamformer statistics connectivity neuroimaging neuroscience time-frequency
Created 2013-01-23
19,928 commits to master branch, last one a day ago
braindecode
braindecode braindecode
178
810
bsd-3-clause
19
Deep learning software to decode EEG, ECG or MEG signals
eeg meg ecog python pytorch neuroimaging neuroscience deep-learning electrocorticography electroencephalogram electroencephalography magnetoencephalography
Created 2020-01-07
1,928 commits to master branch, last one a day ago
nipy
nipype nipy
530
748
other
50
Workflows and interfaces for neuroimaging packages
python big-data brainweb dataflow data-science neuroimaging brain-imaging workflow-engine dataflow-programming
Created 2010-07-22
15,005 commits to master branch, last one 6 days ago
dipy
dipy dipy
439
714
other
54
DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical...
dki dti python bundles tracking denoising patch2self tractometry neuroanatomy neuroimaging registration segmentation tractography diffusion-mri microstructure medical-imaging machine-learning spherical-harmonics contextual-enhancement self-supervised-learning
Created 2010-02-06
14,693 commits to master branch, last one 13 hours ago
nipy
nibabel nipy
258
653
other
37
Python package to access a cacophony of neuro-imaging file formats
tck trk ecat minc dicom gifti nifti python cifti-2 streamlines data-formats neuroimaging brain-imaging afni-brik-head
Created 2010-07-22
6,042 commits to master branch, last one 14 days ago
nipreps
fmriprep nipreps
295
637
apache-2.0
31
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
bids fmri neuroimaging brain-imaging image-processing fmri-preprocessing
Created 2016-03-05
7,607 commits to master branch, last one 3 days ago
freesurfer
freesurfer freesurfer
246
605
other
30
Neuroimaging analysis and visualization suite
lcn mri freesurfer neuroimaging
Created 2017-02-24
33,076 commits to dev branch, last one 7 days ago
gallantlab
pycortex gallantlab
138
591
bsd-2-clause
47
Pycortex is a python-based toolkit for surface visualization of fMRI data
fmri python neuroimaging surface-visualization
Created 2013-08-29
2,428 commits to main branch, last one about a month ago
mikeroyal
Neuromorphic-Computing-Guide mikeroyal
53
356
unknown
19
Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.
neocortex neuroimaging neuromorphic neuroscience brain-imaging neural-engine neuron-models neural-network neural-networks neural-processes neural-rendering neuronal-network neural-simulators neural-engineering neuromorphic-hardware neural-radiance-fields neuromorphic-computing neuromorphic-engineering artificial-neural-networks neural-machine-translation
Created 2021-10-03
25 commits to main branch, last one 10 months ago
neuroneural
brainchop neuroneural
44
351
mit
7
Brainchop: In-browser 3D MRI rendering and segmentation
mri pyodide three-js javascript frontend-app neuroimaging tensorflowjs deep-learning 3d-segmentation medical-imaging mri-segmentation
Created 2021-07-05
577 commits to master branch, last one 12 days ago
brainiak
brainiak brainiak
137
335
apache-2.0
34
Brain Imaging Analysis Kit
fmri distributed neuroimaging neuroscience machine-learning
Created 2016-02-08
399 commits to master branch, last one 4 months ago
jcreinhold
intensity-normalization jcreinhold
59
310
other
5
normalize the intensities of various MR image modalities
fcm mri ravel zscore whitestripe neuroimaging harmonization normalization standardization intensity-normalization
Created 2018-06-10
269 commits to master branch, last one about a year ago
nipreps
mriqc nipreps
132
297
apache-2.0
18
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
mri neuroimaging quality-control machine-learning quality-reporter
Created 2016-01-04
3,731 commits to master branch, last one about a month ago
bids-standard
bids-specification bids-standard
162
277
cc-by-4.0
29
Brain Imaging Data Structure (BIDS) Specification
bids standards neuroimaging data-standards
Created 2018-09-26
4,060 commits to master branch, last one 2 days ago
netneurolab
neuromaps netneurolab
55
243
other
7
A toolbox for comparing brain maps
python neuroimaging brain-imaging hacktoberfest
Created 2021-06-10
283 commits to main branch, last one about a month ago
aramis-lab
clinica aramis-lab
76
225
other
13
Software platform for clinical neuroimaging studies
fsl spm ants python mrtrix3 brainweb freesurfer bids-format neuroimaging neuroscience scikit-learn machine-learning
Created 2019-05-17
3,483 commits to dev branch, last one 12 days ago
bids-standard
legacy-validator bids-standard
111
185
mit
12
Validator for the Brain Imaging Data Structure
bids neuroimaging data-validation
Created 2015-06-09
5,167 commits to master branch, last one 2 days ago
neurostuff
NiMARE neurostuff
58
179
mit
7
Coordinate- and image-based meta-analysis in Python
python neuroimaging meta-analysis
Created 2018-01-16
1,083 commits to main branch, last one about a month ago
cwatson
brainGraph cwatson
51
177
unknown
18
Graph theory analysis of brain MRI data
r mri fmri connectome statistics connectomics graph-theory neuroimaging neuroscience tractography brain-imaging complex-networks network-analysis brain-connectivity
Created 2015-01-22
433 commits to master branch, last one 8 months ago
bids-standard
bids-examples bids-standard
135
175
unknown
34
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
bids dataset standards neuroimaging data-standards
Created 2015-09-25
880 commits to master branch, last one a day ago
ME-ICA
tedana ME-ICA
95
162
lgpl-2.1
20
TE-dependent analysis of multi-echo fMRI
fmri python neuroimaging brain-imaging
Created 2017-11-15
1,185 commits to main branch, last one a day ago
aramis-lab
clinicadl aramis-lab
55
162
mit
9
Framework for the reproducible processing of neuroimaging data with deep learning methods
python pytorch neuroimaging brain-imaging deep-learning medical-imaging alzheimer-disease convolutional-neural-network
Created 2019-07-15
1,895 commits to dev branch, last one 2 days ago