74 results found Sort:

mne-tools
mne-python mne-tools
1.3k
2.6k
bsd-3-clause
83
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
eeg meg ecog python statistics neuroimaging neuroscience visualization machine-learning electrocorticography electroencephalography magnetoencephalography
Created 2011-01-28
17,985 commits to main branch, last one a day ago
nitrain
nitrain nitrain
302
1.9k
agpl-3.0
51
Train AI models efficiently on medical images using any framework
keras pytorch neuroimaging deep-learning medical-imaging
Created 2017-03-01
397 commits to main branch, last one a day ago
Slicer
Slicer Slicer
514
1.5k
other
38
Multi-platform, free open source software for visualization and image computing.
qt itk nih vtk python kitware tcia-dac 3d-slicer 3d-printing c-plus-plus neuroimaging registration segmentation tractography medical-imaging image-processing computed-tomography image-guided-therapy medical-image-computing national-institutes-of-health
Created 2020-03-12
29,245 commits to main branch, last one 12 hours ago
DLTK
DLTK DLTK
404
1.4k
apache-2.0
102
Deep Learning Toolkit for Medical Image Analysis
ml cnn dltk python medical tensorflow data-science neuroimaging deep-learning dltk-model-zoo neural-network medical-imaging neural-networks machine-learning deep-neural-networks medical-image-processing
Created 2017-05-02
379 commits to master branch, last one 5 years ago
ANTsX
ANTs ANTsX
372
1.1k
apache-2.0
67
Advanced Normalization Tools (ANTs)
neuroimaging image-registration image-segmentation medical-image-processing
Created 2013-01-23
5,002 commits to master branch, last one 4 days ago
nilearn
nilearn nilearn
576
1.1k
other
69
Machine learning for NeuroImaging in Python
fmri mvpa python decoding brain-mri neuroimaging brain-imaging machine-learning brain-connectivity
Created 2011-01-09
10,290 commits to main branch, last one 18 hours ago
Slicer
SlicerGitSVNArchive Slicer
460
874
other
90
:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.
qt itk nih vtk python kitware tcia-dac 3d-slicer 3d-printing c-plus-plus neuroimaging registration segmentation tractography cross-platform medical-imaging image-processing image-guided-therapy medical-image-computing national-institutes-of-health
Created 2011-07-06
25,842 commits to master branch, last one 4 years ago
rordenlab
dcm2niix rordenlab
224
815
other
39
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
gz dcm mri nii jpeg dicom nifti nitrc dcm2niix mricrogl research jpeg-image mri-images bids-format dicom-images neuroimaging neuroscience nifti-format
Created 2014-10-19
1,396 commits to master branch, last one 9 days ago
fieldtrip
fieldtrip fieldtrip
709
812
gpl-3.0
49
The MATLAB toolbox for MEG, EEG and iEEG analysis
eeg meg bids ecog ieeg seeg brain dipole matlab donders analysis fieldtrip beamformer statistics connectivity neuroimaging neuroscience time-frequency
Created 2013-01-23
19,840 commits to master branch, last one 17 days ago
nipy
nipype nipy
521
739
other
50
Workflows and interfaces for neuroimaging packages
python big-data brainweb dataflow data-science neuroimaging brain-imaging workflow-engine dataflow-programming
Created 2010-07-22
14,882 commits to master branch, last one a day ago
braindecode
braindecode braindecode
170
726
bsd-3-clause
17
Deep learning software to decode EEG, ECG or MEG signals
eeg meg ecog python pytorch neuroimaging neuroscience deep-learning electrocorticography electroencephalogram electroencephalography magnetoencephalography
Created 2020-01-07
1,894 commits to master branch, last one 19 hours ago
dipy
dipy dipy
429
680
other
54
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images....
dki dti python bundles tracking denoising patch2self tractometry neuroanatomy neuroimaging registration segmentation tractography diffusion-mri microstructure medical-imaging machine-learning spherical-harmonics contextual-enhancement self-supervised-learning
Created 2010-02-06
14,063 commits to master branch, last one 2 days ago
nipy
nibabel nipy
258
630
other
37
Python package to access a cacophony of neuro-imaging file formats
tck trk ecat minc dicom gifti nifti python cifti-2 streamlines data-formats neuroimaging brain-imaging afni-brik-head
Created 2010-07-22
5,860 commits to master branch, last one 2 days ago
nipreps
fmriprep nipreps
285
609
apache-2.0
31
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
bids fmri neuroimaging brain-imaging image-processing fmri-preprocessing
Created 2016-03-05
7,478 commits to master branch, last one 17 days ago
gallantlab
pycortex gallantlab
132
558
bsd-2-clause
47
Pycortex is a python-based toolkit for surface visualization of fMRI data
fmri python neuroimaging surface-visualization
Created 2013-08-29
2,410 commits to main branch, last one 10 days ago
freesurfer
freesurfer freesurfer
237
553
other
31
Neuroimaging analysis and visualization suite
lcn mri freesurfer neuroimaging
Created 2017-02-24
32,708 commits to dev branch, last one 2 days ago
brainiak
brainiak brainiak
135
323
apache-2.0
34
Brain Imaging Analysis Kit
fmri distributed neuroimaging neuroscience machine-learning
Created 2016-02-08
398 commits to master branch, last one 6 months ago
jcreinhold
intensity-normalization jcreinhold
59
298
other
5
normalize the intensities of various MR image modalities
fcm mri ravel zscore whitestripe neuroimaging harmonization normalization standardization intensity-normalization
Created 2018-06-10
269 commits to master branch, last one about a year ago
neuroneural
brainchop neuroneural
34
289
mit
5
Brainchop: In-browser 3D MRI rendering and segmentation
mri pyodide three-js javascript frontend-app neuroimaging tensorflowjs deep-learning 3d-segmentation medical-imaging mri-segmentation
Created 2021-07-05
545 commits to master branch, last one a day ago
nipreps
mriqc nipreps
127
282
apache-2.0
18
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
mri neuroimaging quality-control machine-learning quality-reporter
Created 2016-01-04
3,648 commits to master branch, last one 11 days ago
mikeroyal
Neuromorphic-Computing-Guide mikeroyal
42
264
unknown
17
Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.
neocortex neuroimaging neuromorphic neuroscience brain-imaging neural-engine neuron-models neural-network neural-networks neural-processes neural-rendering neuronal-network neural-simulators neural-engineering neuromorphic-hardware neural-radiance-fields neuromorphic-computing neuromorphic-engineering artificial-neural-networks neural-machine-translation
Created 2021-10-03
25 commits to main branch, last one 4 months ago
bids-standard
bids-specification bids-standard
154
256
cc-by-4.0
29
Brain Imaging Data Structure (BIDS) Specification
bids standards neuroimaging data-standards
Created 2018-09-26
3,726 commits to master branch, last one 16 hours ago
netneurolab
neuromaps netneurolab
47
220
other
6
A toolbox for comparing brain maps
python neuroimaging brain-imaging hacktoberfest
Created 2021-06-10
269 commits to main branch, last one 9 days ago
aramis-lab
clinica aramis-lab
71
216
other
14
Software platform for clinical neuroimaging studies
fsl spm ants python mrtrix3 brainweb freesurfer bids-format neuroimaging neuroscience scikit-learn machine-learning
Created 2019-05-17
3,367 commits to dev branch, last one 2 days ago
bids-standard
bids-validator bids-standard
107
177
mit
12
Validator for the Brain Imaging Data Structure
bids neuroimaging data-validation
Created 2015-06-09
4,585 commits to master branch, last one a day ago
neurostuff
NiMARE neurostuff
56
173
mit
8
Coordinate- and image-based meta-analysis in Python
python neuroimaging meta-analysis
Created 2018-01-16
1,066 commits to main branch, last one 2 days ago
cwatson
brainGraph cwatson
47
164
unknown
17
Graph theory analysis of brain MRI data
r mri fmri connectome statistics connectomics graph-theory neuroimaging neuroscience tractography brain-imaging complex-networks network-analysis brain-connectivity
Created 2015-01-22
433 commits to master branch, last one 3 months ago
bids-standard
bids-examples bids-standard
129
159
unknown
35
A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.
bids dataset standards neuroimaging data-standards
Created 2015-09-25
742 commits to master branch, last one 7 days ago
ME-ICA
tedana ME-ICA
92
157
lgpl-2.1
20
TE-dependent analysis of multi-echo fMRI
fmri python neuroimaging brain-imaging
Created 2017-11-15
1,152 commits to main branch, last one 3 days ago
aramis-lab
clinicadl aramis-lab
52
153
mit
10
Framework for the reproducible processing of neuroimaging data with deep learning methods
python pytorch neuroimaging brain-imaging deep-learning medical-imaging alzheimer-disease convolutional-neural-network
Created 2019-07-15
1,879 commits to dev branch, last one 20 hours ago