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dataset linhandev

396

3.0k

unknown

22

医学影像数据集列表『An Index for Medical Imaging Datasets』

ct mri msd tcia 4d-lung dataset qin-lung-ct grand-challenge medical-imaging qin-prostate-repeatability

Created 2020-12-04

88 commits to main branch, last one 2 years ago

fastMRI facebookresearch

387

1.4k

mit

72

A large-scale dataset of both raw MRI measurements and clinical MRI images.

mri fastmri pytorch deep-learning fastmri-dataset medical-imaging fastmri-challenge mri-reconstruction convolutional-neural-networks

Created 2018-10-26

246 commits to main branch, last one 2 months ago

dcm2niix rordenlab

230

943

other

37

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

gz dcm mri nii jpeg dicom nifti nitrc dcm2niix mricrogl research jpeg-image mri-images bids-format dicom-images neuroimaging neuroscience nifti-format

Created 2014-10-19

1,515 commits to master branch, last one 3 months ago

setup-ruby ruby

298

845

mit

28

An action to download a prebuilt Ruby and add it to the PATH in 5 seconds

mri jruby actions ruby-action truffleruby prebuilt-ruby prebuilt-rubies

Created 2020-01-01

762 commits to master branch, last one 3 days ago

ruru d-unsed

37

832

mit

26

Native Ruby extensions written in Rust

mri ruby ruru rust native-ruby-extensions

Created 2015-12-06

446 commits to master branch, last one 7 years ago

yjit Shopify

20

696

unknown

259

Optimizing JIT compiler built inside CRuby

jit mri ruby cruby codegen bytecode compiler ruby-jit jit-compiler

Created 2021-04-19

69,447 commits to main branch, last one 9 months ago

freesurfer freesurfer

254

663

other

31

Neuroimaging analysis and visualization suite

lcn mri freesurfer neuroimaging

Created 2017-02-24

33,352 commits to dev branch, last one 3 days ago

regexp-examples tom-lord

31

521

mit

16

Generate strings that match a given regular expression

mri ruby regexp random-string data-generation

Created 2014-11-04

432 commits to master branch, last one 10 months ago

brainchop neuroneural

49

413

mit

7

Brainchop: In-browser 3D MRI rendering and segmentation

mri pyodide three-js javascript frontend-app neuroimaging tensorflowjs deep-learning 3d-segmentation medical-imaging mri-segmentation

Created 2021-07-05

589 commits to master branch, last one 20 days ago

medicaldiffusion FirasGit

68

401

unknown

4

Medical Diffusion: This repository contains the code to our paper Medical Diffusion: Denoising Diffusion Probabilistic Models for 3D Medical Image Synthesis

ct mri diffusion-models machine-learning

Created 2022-09-19

20 commits to master branch, last one 2 years ago

deepinv deepinv

84

381

bsd-3-clause

7

PyTorch library for solving imaging inverse problems using deep learning

mri unfolded deblurring deep-learning plug-and-play diffusion-models image-processing inverse-problems super-resolution computed-tomography computational-imaging deep-equilibrium-models

Created 2023-02-10

988 commits to main branch, last one 10 days ago

Deep-MRI-Reconstruction js3611

104

332

other

18

Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction: Implementation & Demo

mri deep-learning compressed-sensing deep-neural-networks image-reconstruction convolutional-neural-networks

Created 2017-05-30

16 commits to master branch, last one 6 years ago

intensity-normalization jcreinhold

58

322

other

4

normalize the intensities of various MR image modalities

fcm mri ravel zscore whitestripe neuroimaging harmonization normalization standardization intensity-normalization

Created 2018-06-10

271 commits to master branch, last one 2 months ago

mriqc nipreps

132

314

apache-2.0

15

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

mri neuroimaging quality-control machine-learning quality-reporter

Created 2016-01-04

3,800 commits to master branch, last one about a month ago

sigpy mikgroup

96

314

bsd-3-clause

32

Python package for signal processing, with emphasis on iterative methods

gpu mri nufft optimization reconstruction rf-pulse-design machine-learning signal-processing compressed-sensing iterative-algorithms

Created 2018-07-03

1,132 commits to main branch, last one 3 months ago

bart mrirecon

164

311

bsd-3-clause

45

BART: Toolbox for Computational Magnetic Resonance Imaging

mri bart-toolbox deep-learning iterative-methods compressed-sensing computational-imaging

Created 2014-08-22

3,803 commits to master branch, last one 4 days ago

VT-UNet himashi92

35

261

mit

8

[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation

mri vtunet pytorch transformer segmentation brats-dataset deep-learning pure-transformer tumor-segmentation vision-transformer semantic-segmentation pytorch-implementation volumetric-transformer 3d-medical-imaging-segmentation

Created 2021-11-25

35 commits to main branch, last one 2 years ago

torchkbnufft mmuckley

46

226

mit

8

A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.

mri nufft pytorch deep-learning reconstruction

Created 2019-11-11

118 commits to main branch, last one 3 months ago

Brain-Tumor-Segmentation Mehrdad-Noori

33

224

unknown

5

Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation

mri brats keras u-net multi-view tensorflow2 deep-learning attention-mechanism brain-tumor-segmentation

Created 2019-11-01

72 commits to master branch, last one 5 years ago

spinalcordtoolbox spinalcordtoolbox

103

220

lgpl-3.0

28

Comprehensive and open-source library of analysis tools for MRI of the spinal cord.

mri python neuroimage spinalcord

Created 2014-05-31

8,686 commits to master branch, last one 2 days ago

workbench Washington-University

65

196

gpl-2.0

21

Connectome Workbench

mri cifti gifti nifti c-plus-plus neuroscience

Created 2012-03-07

9,141 commits to master branch, last one 2 days ago

brainGraph cwatson

53

188

unknown

18

Graph theory analysis of brain MRI data

r mri fmri connectome statistics connectomics graph-theory neuroimaging neuroscience tractography brain-imaging complex-networks network-analysis brain-connectivity

Created 2015-01-22

433 commits to master branch, last one about a year ago

Unsupervised_Anomaly_Detection_Brain_MRI StefanDenn3r

34

184

gpl-3.0

7

Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study

gan mri autoencoder segmentation deep-learning anomaly-detection unsupervised-learning variational-autoencoder

Created 2020-04-06

11 commits to master branch, last one 2 years ago

afni afni

109

168

other

18

Official AFNI source and documentation

dwi mri fmri statistics fmri-analysis visualization anatomical-mri quality-control fmri-data-analysis statistical-inference

Created 2015-05-07

23,807 commits to master branch, last one a day ago

qMRLab qMRLab

58

167

mit

24

Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization

mri qmri mapping analysis relaxometry quantitative magnetization data-simulation quantitative-mri magnetic-resonance-imaging

Created 2015-08-27

837 commits to master branch, last one about a year ago

fastmri-reproducible-benchmark zaccharieramzi

52

157

mit

2

Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.

mri fastmri tensorflow neural-network fastmri-dataset fastmri-challenge mri-reconstruction convolutional-neural-networks unrolled-reconstruction-algorithm

Created 2019-06-21

423 commits to master branch, last one about a year ago

CNN_design_for_AD NYUMedML

39

152

agpl-3.0

11

Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"

mri dementia brain-mri clinical-data deep-learning medical-imaging alzheimer-disease artificial-intelligence mild-cognitive-impairment convolutional-neural-networks

Created 2019-10-22

100 commits to master branch, last one 2 years ago

ResViT icon-lab

27

145

other

4

Official Implementation of ResViT: Residual Vision Transformers for Multi-modal Medical Image Synthesis

mri attention transformers deep-learning image-synthesis medical-imaging residual-learning vision-transformer image-to-image-translation

Created 2021-10-18

39 commits to main branch, last one about a year ago

ENIGMA MICA-MNI

35

145

bsd-3-clause

8

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macrosca...

mri enigma awesome analysis multisite workflows multiscale open-source connectomics neuroimaging straight-fire visualization life-changing-magic

Created 2020-07-15

664 commits to master branch, last one 11 months ago

pypulseq imr-framework

70

144

agpl-3.0

11

Pulseq in Python

mri pulseq python mri-sequences pulse-sequences

Created 2019-03-20

392 commits to master branch, last one 9 days ago