Search Results - RepositoryStats

nilearn nilearn

615

1.2k

other

64

Machine learning for NeuroImaging in Python

fmri mvpa python decoding brain-mri neuroimaging brain-imaging machine-learning brain-connectivity

Created 2011-01-09

10,758 commits to main branch, last one 3 days ago

fmriprep nipreps

297

647

apache-2.0

30

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

bids fmri neuroimaging brain-imaging image-processing fmri-preprocessing

Created 2016-03-05

7,651 commits to master branch, last one 3 days ago

pycortex gallantlab

140

607

bsd-2-clause

47

Pycortex is a python-based toolkit for surface visualization of fMRI data

fmri python neuroimaging surface-visualization

Created 2013-08-29

2,431 commits to main branch, last one about a month ago

brainiak brainiak

139

348

apache-2.0

34

Brain Imaging Analysis Kit

fmri distributed neuroimaging neuroscience machine-learning

Created 2016-02-08

406 commits to master branch, last one 27 days ago

tapas translationalneuromodeling

91

229

gpl-3.0

24

TAPAS - Translational Algorithms for Psychiatry-Advancing Science

eeg fmri neurology behavioral psychiatry neuroscience computational psychosomatics bayesian-inference hierarchical-models statistical-learning

Created 2017-01-14

860 commits to master branch, last one 2 months ago

brainGraph cwatson

53

187

unknown

18

Graph theory analysis of brain MRI data

r mri fmri connectome statistics connectomics graph-theory neuroimaging neuroscience tractography brain-imaging complex-networks network-analysis brain-connectivity

Created 2015-01-22

433 commits to master branch, last one 11 months ago

NeuroRA ZitongLu1996

34

177

mit

6

A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analy...

eeg isc meg nps rsa ecog fmri seeg stps fnirs decoding neural-data classification python-toolbox electrophysiology representation-similarity representational-analysis

Created 2019-04-30

2 commits to master branch, last one 9 months ago

tedana ME-ICA

95

166

lgpl-2.1

20

TE-dependent analysis of multi-echo fMRI

fmri python neuroimaging brain-imaging

Created 2017-11-15

1,201 commits to main branch, last one 7 days ago

afni afni

106

165

other

19

Official AFNI source and documentation

dwi mri fmri statistics fmri-analysis visualization anatomical-mri quality-control fmri-data-analysis statistical-inference

Created 2015-05-07

23,667 commits to master branch, last one a day ago

CanlabCore canlab

83

150

other

51

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level co...

fmri canlab matlab mediation toolboxes connectivity neuroscience meta-analysis machine-learning

Created 2014-08-12

1,695 commits to master branch, last one 3 days ago

PyNets dPys

41

123

unknown

9

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

dipy dmri fmri nipype nilearn networks networkx workflow gridsearch multiverse fuzzy-logic optimization tractography decision-trees ensemble-learning ensemble-sampling brain-connectivity graph-neural-networks

Created 2017-03-29

2,166 commits to master branch, last one 2 years ago

nltools cosanlab

43

122

mit

10

Python toolbox for analyzing imaging data

fmri python toolbox multivariate python-toolbox machine-learning neuroimaging-data

Created 2015-01-04

1,399 commits to master branch, last one 6 months ago

dyconnmap makism

31

104

bsd-3-clause

9

A dynamic connectome mapping module in python.

eeg meg fmri graphs python dynamic fc-states clustering connectome connectivity neuroimaging neuroscience time-varying graph-analysis graph-distances functional-connectivity

Created 2017-07-28

644 commits to master branch, last one 2 years ago

NeuroVault NeuroVault

65

101

mit

14

Easy to use web database for statistical maps.

fmri django statmaps open-source brain-imaging cognitive-concepts

Created 2013-02-01

2,876 commits to master branch, last one a day ago

spm spm

30

98

gpl-2.0

13

SPM (Statistical Parametric Mapping) - Development Version

dcm eeg meg opm pet spm vbm fmri brain nifti spect matlab mapping parametric statistical neuroimaging neuroscience

Created 2021-09-29

11,307 commits to main branch, last one 9 days ago

BrainEigenmodes NSBLab

16

92

apache-2.0

9

Code supporting 'Geometric constraints on human brain function'

fmri modeling eigenmodes neuroscience brain-imaging brain-function computational-neuroscience

Created 2023-04-06

90 commits to main branch, last one about a year ago

stagin egyptdj

16

89

gpl-3.0

1

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

gnn fmri stagin neurips attention connectome neurips2021 neuroimaging explainability graph-neural-network

Created 2021-05-27

26 commits to main branch, last one about a year ago

mmvt pelednoam

26

89

unknown

19

The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data

meg fmri visualization 3d-visualization neuroimaging-data multi-modality-visualization

Created 2015-09-24

41 commits to master branch, last one 2 years ago

teneto wiheto

27

85

gpl-3.0

5

Temporal Network Tools

bids fmri python dynamics networks neuroscience network-theory temporal-networks community-detection temporal-network-theory time-varying-connectivity

Created 2016-06-19

1,417 commits to master branch, last one about a year ago

bisweb bioimagesuiteweb

32

81

apache-2.0

16

This is the repository for the BioImage Suite Web Project

fmri nifti viewer medical webassembly image-processing nih-brain-initiative neuroimaging-analysis

Created 2018-04-18

3,649 commits to devel branch, last one 2 days ago

HALFpipe HALFpipe

13

80

other

3

ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

bids fmri pipeline neuroimaging meta-analysis reproducibility

Created 2020-06-30

2,259 commits to main branch, last one 2 days ago

NiChord paulcbogdan

7

79

mit

3

Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib

fmri python networks connectivity visualization

Created 2022-05-22

33 commits to main branch, last one 14 days ago

gift trendscenter

43

77

unknown

9

Group ICA/IVA software (MATLAB)

eeg ica iva pca fmri smri matlab analyze nifti-1 nifti-2 nifti-gz group-pca gifttoolbox group-analysis

Created 2019-07-31

574 commits to master branch, last one 26 days ago

NIfTI.jl JuliaNeuroscience

34

74

other

6

Julia module for reading/writing NIfTI MRI files

mri fmri julia nifti mri-images

Created 2013-01-20

155 commits to master branch, last one about a month ago

automaticanalysis automaticanalysis

35

73

mit

19

Automatic Analysis (aa)

eeg fmri matlab big-data dataflow pipeline diffusion neuroimaging workflow-engine parallel-computing workflow-automation

Created 2012-03-24

3,093 commits to master branch, last one 2 months ago

visualqc raamana

13

73

apache-2.0

6

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

qc fmri cortex alignment freesurfer mri-images neuroimaging neuroscience registration anatomical-mri medical-imaging outlier-removal quality-control outlier-detection

Created 2017-10-06

665 commits to master branch, last one 7 months ago

connectomemapper3 connectomicslab

29

72

other

4

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data ...

eeg bids chuv dmri fmri brain docker python bidsapp bids-apps pipelines connectome singularity parcellation

Created 2019-04-24

3,688 commits to master branch, last one 5 months ago

NeuroClips gongzix

3

72

unknown

5

Official code base for NeuroClips

fmri blip2 fmri-to-video brain-decoding videodiffusion

Created 2024-05-15

135 commits to main branch, last one 2 days ago

network_TDA_tutorial multinetlab-amsterdam

24

67

gpl-3.0

4

This repository is dedicated for the tutorial on network and topological neuroscience.

tda fmri graph-theory neuroimaging neuroscience topological-data-analysis

Created 2020-12-14

62 commits to main branch, last one 12 months ago

fmriflows miykael

20

62

bsd-3-clause

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fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analys...

bids fmri python neuroimaging

Created 2018-06-25

372 commits to master branch, last one 2 years ago