Search Results - RepositoryStats

ffn google

99

306

apache-2.0

22

Flood-Filling Networks for instance segmentation in 3d volumes.

ffn connectomics segmentation instance-segmentation flood-filling-networks

Created 2017-11-10

93 commits to master branch, last one about a month ago

euclidean-distance-transform-3d seung-lab

37

225

gpl-3.0

25

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

1d 2d 3d cpp numpy python parallel algorithm anisotropy anisotropic connectomics neuroscience distance-transform euclidean-distance marching-parabolas signed-distance-field signed-distance-functions biomedical-image-processing euclidean-distance-transform

Created 2018-07-25

215 commits to master branch, last one 9 days ago

dvid janelia-flyem

33

195

other

19

Distributed, Versioned, Image-oriented Dataservice

go big-data key-value versioning dataservice connectomics http-service neuroscience image-storage

Created 2013-01-29

2,122 commits to master branch, last one a day ago

skeletor navis-org

24

192

gpl-3.0

3

Extraction of 3D skeletons from meshes.

3d mesh meshes python teasar neurons volumes skeleton skeletonize connectomics skeletonization skeleton-extraction

Created 2018-10-15

240 commits to master branch, last one 2 months ago

CATMAID catmaid

56

182

gpl-3.0

25

Collaborative Annotation Toolkit for Massive Amounts of Image Data

connectomics neuroscience image-annotation network-analysis

Created 2011-01-27

16,114 commits to master branch, last one about a year ago

pytorch_connectomics zudi-lin

76

168

mit

6

PyTorch Connectomics: segmentation toolbox for EM connectomics

pytorch microscopy connectomics neuroscience segmentation deep-learning computer-vision biomedical-image-processing

Created 2019-03-27

1,008 commits to master branch, last one 7 days ago

brainGraph cwatson

48

164

unknown

17

Graph theory analysis of brain MRI data

r mri fmri connectome statistics connectomics graph-theory neuroimaging neuroscience tractography brain-imaging complex-networks network-analysis brain-connectivity

Created 2015-01-22

433 commits to master branch, last one 4 months ago

qsiprep PennLINC

54

136

bsd-3-clause

15

Preprocessing and reconstruction of diffusion MRI

python pipelines connectomics tractography diffusion-mri

Created 2018-11-07

624 commits to master branch, last one a day ago

kimimaro seung-lab

22

129

gpl-3.0

25

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

voxel python teasar python2 python3 skeletons centerline connectomics cross-section skeletonization volumetric-data cross-section-area image-segmentation centerline-extraction medial-axis-transform computer-vision-algorithms biomedical-image-processing

Created 2019-01-16

258 commits to master branch, last one 4 days ago

cloud-volume seung-lab

42

127

bsd-3-clause

29

Read and write Neuroglancer datasets programmatically.

Created 2017-07-25

1,236 commits to master branch, last one 13 days ago

webknossos scalableminds

18

123

agpl-3.0

14

Visualize, share and annotate your large 3D images online

em microscopy connectomics neurobiology hacktoberfest reconstruction microscopy-images

Created 2012-05-14

17,101 commits to master branch, last one 23 hours ago

ENIGMA MICA-MNI

27

120

bsd-3-clause

8

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macrosca...

mri enigma awesome analysis multisite workflows multiscale open-source connectomics neuroimaging straight-fire visualization life-changing-magic

Created 2020-07-15

664 commits to master branch, last one 2 months ago

dotmotif aplbrain

9

82

apache-2.0

11

A performant, powerful query framework to search for network motifs

vf2 graph neo4j bossdb motifs python aplbrain dotmotif networkx connectome connectomics graph-database graph-matching query-language motif-discovery subgraph-isomorphism

Created 2018-04-24

171 commits to master branch, last one 8 months ago

knossos knossos-project

18

72

gpl-2.0

17

KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.

linux macos desktop windows connectomics neuroscience visualization cross-platform image-annotation

Created 2014-05-14

4,219 commits to master branch, last one 4 months ago

micaopen MICA-MNI

37

71

gpl-3.0

17

Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

networks gradients histology multimodal multi-scale connectomics neuroimaging neuroscience machine-learning

Created 2017-03-09

432 commits to master branch, last one 5 months ago

nat natverse

26

61

unknown

17

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

r 3d cran neuron connectomics neuroanatomy neuroscience visualisation image-analysis neuron-morphology neuroanatomy-toolbox

Created 2014-01-02

2,823 commits to master branch, last one 4 months ago

zmesh seung-lab

8

55

gpl-3.0

19

Marching Cubes & Mesh Simplification on multi-label 3D images.

python meshing connectomics marching-cubes mesh-generation mesh-processing volumetric-data mesh-simplification marching-cubes-algorithm biomedical-image-processing

Created 2019-04-29

135 commits to master branch, last one 3 days ago

grandiso-networkx aplbrain

10

52

apache-2.0

10

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

vf2 bossdb graphs ullman network aplbrain dotmotif algorithm grand-iso connectomics grand-graphs network-biology network-analysis subgraph-isomorphism

Created 2020-08-10

73 commits to master branch, last one 4 months ago

sofima google-research

12

50

apache-2.0

8

Scalable Optical Flow-based Image Montaging and Alignment

2d 3d 4d jax python3 microscopy connectomics alignment-algorithm electron-microscopy stitching-algorithm biomedical-image-processing

Created 2022-02-11

50 commits to main branch, last one 3 months ago