Search Results - RepositoryStats

ffn google

100

319

apache-2.0

22

Flood-Filling Networks for instance segmentation in 3d volumes.

ffn connectomics segmentation instance-segmentation flood-filling-networks

Created 2017-11-10

108 commits to master branch, last one 4 days ago

euclidean-distance-transform-3d seung-lab

36

243

gpl-3.0

25

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

1d 2d 3d cpp numpy python parallel algorithm anisotropy anisotropic connectomics neuroscience distance-transform euclidean-distance marching-parabolas signed-distance-field signed-distance-functions biomedical-image-processing euclidean-distance-transform

Created 2018-07-25

220 commits to master branch, last one 5 months ago

skeletor navis-org

26

212

gpl-3.0

3

Extraction of 3D skeletons from meshes.

3d mesh meshes python teasar neurons volumes skeleton skeletonize connectomics skeletonization skeleton-extraction

Created 2018-10-15

260 commits to master branch, last one 3 months ago

dvid janelia-flyem

33

198

other

19

Distributed, Versioned, Image-oriented Dataservice

go big-data key-value versioning dataservice connectomics http-service neuroscience image-storage

Created 2013-01-29

2,148 commits to master branch, last one 17 days ago

CATMAID catmaid

57

188

gpl-3.0

23

Collaborative Annotation Toolkit for Massive Amounts of Image Data

connectomics neuroscience image-annotation network-analysis

Created 2011-01-27

16,114 commits to master branch, last one 2 years ago

brainGraph cwatson

53

184

unknown

18

Graph theory analysis of brain MRI data

r mri fmri connectome statistics connectomics graph-theory neuroimaging neuroscience tractography brain-imaging complex-networks network-analysis brain-connectivity

Created 2015-01-22

433 commits to master branch, last one 10 months ago

pytorch_connectomics zudi-lin

77

172

mit

6

PyTorch Connectomics: segmentation toolbox for EM connectomics

pytorch microscopy connectomics neuroscience segmentation deep-learning computer-vision biomedical-image-processing

Created 2019-03-27

1,027 commits to master branch, last one 5 days ago

kimimaro seung-lab

24

138

gpl-3.0

26

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

voxel python teasar python2 python3 skeletons centerline connectomics cross-section skeletonization volumetric-data cross-section-area image-segmentation centerline-extraction medial-axis-transform computer-vision-algorithms biomedical-image-processing

Created 2019-01-16

267 commits to master branch, last one 4 months ago

cloud-volume seung-lab

48

135

bsd-3-clause

29

Read and write Neuroglancer datasets programmatically.

Created 2017-07-25

1,337 commits to master branch, last one 2 days ago

ENIGMA MICA-MNI

32

133

bsd-3-clause

8

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macrosca...

mri enigma awesome analysis multisite workflows multiscale open-source connectomics neuroimaging straight-fire visualization life-changing-magic

Created 2020-07-15

664 commits to master branch, last one 8 months ago

webknossos scalableminds

24

131

agpl-3.0

15

Visualize, share and annotate your large 3D images online

em microscopy connectomics neurobiology hacktoberfest reconstruction microscopy-images

Created 2012-05-14

17,339 commits to master branch, last one 2 days ago

dotmotif aplbrain

9

81

apache-2.0

11

A performant, powerful query framework to search for network motifs

vf2 graph neo4j bossdb motifs python aplbrain dotmotif networkx connectome connectomics graph-database graph-matching query-language motif-discovery subgraph-isomorphism

Created 2018-04-24

180 commits to master branch, last one 4 months ago

knossos knossos-project

19

74

gpl-2.0

17

KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.

linux macos desktop windows connectomics neuroscience visualization cross-platform image-annotation

Created 2014-05-14

4,226 commits to master branch, last one about a month ago

micaopen MICA-MNI

40

73

gpl-3.0

16

Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

networks gradients histology multimodal multi-scale connectomics neuroimaging neuroscience machine-learning

Created 2017-03-09

496 commits to master branch, last one 24 days ago

nat natverse

28

64

unknown

17

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

r 3d cran neuron connectomics neuroanatomy neuroscience visualisation image-analysis neuron-morphology neuroanatomy-toolbox

Created 2014-01-02

2,851 commits to master branch, last one 2 months ago

zmesh seung-lab

8

60

gpl-3.0

20

Marching Cubes & Mesh Simplification on multi-label 3D images.

python meshing connectomics marching-cubes mesh-generation mesh-processing volumetric-data mesh-simplification marching-cubes-algorithm biomedical-image-processing

Created 2019-04-29

143 commits to master branch, last one 2 months ago

grandiso-networkx aplbrain

10

57

apache-2.0

10

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

vf2 bossdb graphs ullman network aplbrain dotmotif algorithm grand-iso connectomics grand-graphs network-biology network-analysis subgraph-isomorphism

Created 2020-08-10

73 commits to master branch, last one 10 months ago

sofima google-research

13

54

apache-2.0

8

Scalable Optical Flow-based Image Montaging and Alignment

2d 3d 4d jax python3 microscopy connectomics alignment-algorithm electron-microscopy stitching-algorithm biomedical-image-processing

Created 2022-02-11

74 commits to main branch, last one 9 days ago

brainconn sidchop

7

47

other

3

Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D

eeg meg mri networks connectivity connectomics neuroimaging connectivity-matrix

Created 2020-04-25

145 commits to master branch, last one 11 months ago

connectomics google-research

11

33

apache-2.0

7

This repository has no description...

connectomics

Created 2022-02-11

154 commits to main branch, last one 3 days ago