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Flood-Filling Networks for instance segmentation in 3d volumes.
Created
2017-11-10
114 commits to master branch, last one 24 days ago
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
Created
2018-07-25
220 commits to master branch, last one 6 months ago
Extraction of 3D skeletons from meshes.
Created
2018-10-15
260 commits to master branch, last one 5 months ago
Distributed, Versioned, Image-oriented Dataservice
Created
2013-01-29
2,152 commits to master branch, last one 22 days ago
Collaborative Annotation Toolkit for Massive Amounts of Image Data
Created
2011-01-27
16,114 commits to master branch, last one 2 years ago
Graph theory analysis of brain MRI data
Created
2015-01-22
433 commits to master branch, last one 11 months ago
PyTorch Connectomics: segmentation toolbox for EM connectomics
Created
2019-03-27
1,027 commits to master branch, last one about a month ago
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
Created
2019-01-16
273 commits to master branch, last one 10 days ago
Read and write Neuroglancer datasets programmatically.
Created
2017-07-25
1,347 commits to master branch, last one a day ago
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macrosca...
Created
2020-07-15
664 commits to master branch, last one 9 months ago
Visualize, share and annotate your large 3D images online
Created
2012-05-14
17,390 commits to master branch, last one 21 hours ago
A performant, powerful query framework to search for network motifs
Created
2018-04-24
180 commits to master branch, last one 5 months ago
KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.
Created
2014-05-14
4,226 commits to master branch, last one 3 months ago
Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
Created
2017-03-09
496 commits to master branch, last one 2 months ago
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
Created
2014-01-02
2,851 commits to master branch, last one 3 months ago
Marching Cubes & Mesh Simplification on multi-label 3D images.
Created
2019-04-29
143 commits to master branch, last one 3 months ago
Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
Created
2020-08-10
73 commits to master branch, last one 11 months ago
Scalable Optical Flow-based Image Montaging and Alignment
Created
2022-02-11
76 commits to main branch, last one 21 days ago
Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D
Created
2020-04-25
145 commits to master branch, last one about a year ago
BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collab...
matlab
toolbox
open-source
connectomics
data-science
graph-theory
neuroimaging
neuroscience
data-analysis
deep-learning
brain-research
research-tools
machine-learning
network-analysis
data-visualization
scientific-software
reproducible-research
biomedical-engineering
computational-neuroscience
brain-connectivity-analysis
Created
2020-02-03
8,194 commits to develop branch, last one 13 hours ago
This repository has no description...
Created
2022-02-11
159 commits to main branch, last one 3 days ago