7 results found Sort:

dipy
dipy dipy
444
730
other
57
DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical...
dki dti python bundles tracking denoising patch2self tractometry neuroanatomy neuroimaging registration segmentation tractography diffusion-mri microstructure medical-imaging machine-learning spherical-harmonics contextual-enhancement self-supervised-learning
Created 2010-02-06
14,757 commits to master branch, last one 6 days ago
brainglobe
cellfinder brainglobe
39
182
bsd-3-clause
15
Automated 3D cell detection in very large images
python imaging microscopy neuroanatomy neuroscience deep-learning cell-detection image-analysis
Created 2020-01-17
756 commits to main branch, last one 2 days ago
brainglobe
brainreg brainglobe
29
129
bsd-3-clause
9
Automated 3D brain registration with support for multiple species and atlases.
brain atlases microscopy neuroanatomy neuroscience registration
Created 2020-05-26
224 commits to main branch, last one 2 days ago
ai-med
quickNAT_pytorch ai-med
37
103
mit
9
PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
ai pytorch bayesian biomarkers mri-images uncertainty neuroanatomy segmentation brain-imaging deep-learning computer-vision medical-imaging quality-control machine-learning convolutional-neural-networks
Created 2018-05-24
97 commits to master branch, last one 4 years ago
navis-org
navis navis-org
33
86
gpl-3.0
6
Python library for analysis of neuroanatomical data.
3d swc meshes nblast python anatomy blender flywire neurons volumes neuprint hemibrain skeletons transform connectome morphometric neuroanatomy neuroscience segmentation visualization
Created 2019-01-29
2,244 commits to master branch, last one 10 days ago
natverse
nat natverse
28
66
unknown
17
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
r 3d cran neuron connectomics neuroanatomy neuroscience visualisation image-analysis neuron-morphology neuroanatomy-toolbox
Created 2014-01-02
2,851 commits to master branch, last one 3 months ago
volBrain
AssemblyNet volBrain
11
54
other
5
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
mri nifti autism docker dementia alzheimer parkinson neuroanatomy neuroimaging neuroscience brain-imaging deep-learning schizophrenia medical-imaging mri-segmentation brain-segmentation neurodegenerative-diseases
Created 2021-02-17
18 commits to main branch, last one about a year ago