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Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for ...
Created
2018-12-26
100 commits to master branch, last one 5 months ago
Image-processing software for cryo-electron microscopy
Created
2017-01-26
6,197 commits to master branch, last one about a month ago
Tools for computational pathology
Created
2019-07-31
1,384 commits to master branch, last one 14 days ago
cuCIM - RAPIDS GPU-accelerated image processing library
Created
2021-04-09
536 commits to branch-24.12 branch, last one 7 days ago
Scientific analysis of nanoscale materials imaging data
Created
2016-06-18
4,049 commits to main branch, last one 5 months ago
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
Created
2023-06-20
94 commits to main branch, last one 5 months ago
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Created
2020-03-18
1,854 commits to master branch, last one about a month ago
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Created
2019-06-27
565 commits to main branch, last one 3 months ago
Deep and Machine Learning for Microscopy
imaging
pytorch
materials
microscopy
deep-learning
jupyter-notebook
machine-learning
ensemble-learning
materials-science
electron-microscopy
google-colaboratory
deep-kernel-learning
multivariate-analysis
semantic-segmentation
variational-autoencoders
scanning-probe-microscopy
fully-convolutional-networks
Created
2020-09-04
1,412 commits to master branch, last one 9 months ago
Automated 3D cell detection in very large images
Created
2020-01-17
751 commits to main branch, last one 7 days ago
PyTorch Connectomics: segmentation toolbox for EM connectomics
Created
2019-03-27
1,023 commits to master branch, last one 19 hours ago
Read and write Neuroglancer datasets programmatically.
Created
2017-07-25
1,322 commits to master branch, last one 12 days ago
Visualize, share and annotate your large 3D images online
Created
2012-05-14
17,294 commits to master branch, last one a day ago
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Created
2018-10-27
467 commits to master branch, last one 4 months ago
A lightweight python module to interact with atlases for systems neuroscience
Created
2020-04-30
320 commits to main branch, last one a day ago
Automated 3D brain registration with support for multiple species and atlases.
Created
2020-05-26
220 commits to main branch, last one 9 days ago
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
Created
2022-03-20
133 commits to main branch, last one about a month ago
Axon/Myelin segmentation using Deep Learning
Created
2016-09-26
766 commits to master branch, last one a day ago
A collection of tools for painting super-resolution images
Created
2016-10-27
2,355 commits to master branch, last one about a month ago
Loading and handling microscopy data in blender
Created
2023-10-03
276 commits to main branch, last one 5 hours ago
This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
Created
2020-08-06
1,489 commits to master branch, last one about a year ago
Electron/X-ray ptychography and tomography/laminography
Created
2021-01-08
343 commits to main branch, last one 3 months ago
Encoder-Decoder Cell and Nuclei segmentation models
Created
2022-01-22
344 commits to main branch, last one 4 months ago
Python package for processing image-based profiling data
Created
2019-07-03
745 commits to main branch, last one 18 hours ago
Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3
Created
2020-02-03
71 commits to master branch, last one 9 months ago
Self-supervised models for encoding protein localization patterns from microscopy images
Created
2021-04-27
88 commits to main branch, last one 2 months ago
python functions for simulating optical transfer functions
Created
2016-09-21
258 commits to master branch, last one 7 months ago
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Created
2020-03-20
3,063 commits to master branch, last one 29 days ago
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
Created
2022-11-15
107 commits to main branch, last one 5 months ago
Open and Affordable Quantitative Imaging Platform
Created
2020-03-19
854 commits to master branch, last one 17 days ago