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Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for ...
Created
2018-12-26
100 commits to master branch, last one 9 months ago
Image-processing software for cryo-electron microscopy
Created
2017-01-26
7,156 commits to master branch, last one 3 days ago
Tools for computational pathology
Created
2019-07-31
1,385 commits to master branch, last one about a month ago
cuCIM - RAPIDS GPU-accelerated image processing library
Created
2021-04-09
579 commits to branch-25.04 branch, last one 11 days ago
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
Created
2023-06-20
95 commits to main branch, last one 2 months ago
Scientific analysis of nanoscale materials imaging data
Created
2016-06-18
4,058 commits to main branch, last one 17 days ago
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Created
2020-03-18
1,856 commits to master branch, last one about a month ago
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Created
2019-06-27
566 commits to main branch, last one 2 months ago
Deep and Machine Learning for Microscopy
imaging
pytorch
materials
microscopy
deep-learning
jupyter-notebook
machine-learning
ensemble-learning
materials-science
electron-microscopy
google-colaboratory
deep-kernel-learning
multivariate-analysis
semantic-segmentation
variational-autoencoders
scanning-probe-microscopy
fully-convolutional-networks
Created
2020-09-04
1,412 commits to master branch, last one about a year ago
Automated 3D cell detection in very large images
Created
2020-01-17
764 commits to main branch, last one 21 days ago
DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.
Created
2020-04-14
1,683 commits to develop branch, last one 21 hours ago
PyTorch Connectomics: segmentation toolbox for EM connectomics
Created
2019-03-27
1,038 commits to master branch, last one about a month ago
Read and write Neuroglancer datasets programmatically.
Created
2017-07-25
1,364 commits to master branch, last one 6 days ago
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
Created
2022-03-20
136 commits to main branch, last one 16 days ago
A Python interface to access neuroanatomical atlases
Created
2020-04-30
378 commits to main branch, last one a day ago
Visualize, share and annotate your large 3D images online
Created
2012-05-14
17,447 commits to master branch, last one a day ago
Automated 3D brain registration with support for multiple species and atlases.
Created
2020-05-26
230 commits to main branch, last one 21 days ago
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Created
2018-10-27
470 commits to master branch, last one 5 days ago
A collection of tools for painting super-resolution images
Created
2016-10-27
2,390 commits to master branch, last one about a month ago
Axon/Myelin segmentation using Deep Learning
Created
2016-09-26
797 commits to master branch, last one 18 days ago
Loading and handling microscopy data in blender
Created
2023-10-03
320 commits to main branch, last one 5 days ago
Python package for processing image-based profiling data
Created
2019-07-03
769 commits to main branch, last one 12 days ago
This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
Created
2020-08-06
1,489 commits to master branch, last one about a year ago
Electron/X-ray ptychography and tomography/laminography
Created
2021-01-08
344 commits to main branch, last one 4 months ago
Encoder-Decoder Cell and Nuclei segmentation models
Created
2022-01-22
433 commits to main branch, last one about a month ago
Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3
Created
2020-02-03
71 commits to master branch, last one about a year ago
Image reading, metadata management, and image writing for Microscopy images in Python
Created
2022-08-12
208 commits to main branch, last one 6 days ago
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
Created
2022-11-15
111 commits to main branch, last one 23 days ago
Self-supervised models for encoding protein localization patterns from microscopy images
Created
2021-04-27
88 commits to main branch, last one 6 months ago
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Created
2020-03-20
3,063 commits to master branch, last one 5 months ago