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Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for ...
Created
2018-12-26
100 commits to master branch, last one 19 days ago
Image-processing software for cryo-electron microscopy
Created
2017-01-26
6,189 commits to master branch, last one 5 months ago
Tools for computational pathology
Created
2019-07-31
1,011 commits to master branch, last one 2 months ago
cuCIM - RAPIDS GPU-accelerated image processing library
Created
2021-04-09
499 commits to branch-24.08 branch, last one 2 days ago
Scientific analysis of nanoscale materials imaging data
Created
2016-06-18
4,049 commits to main branch, last one 21 days ago
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Created
2020-03-18
1,846 commits to master branch, last one about a month ago
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Created
2019-06-27
563 commits to main branch, last one 3 months ago
Deep and Machine Learning for Microscopy
imaging
pytorch
materials
microscopy
deep-learning
jupyter-notebook
machine-learning
ensemble-learning
materials-science
electron-microscopy
google-colaboratory
deep-kernel-learning
multivariate-analysis
semantic-segmentation
variational-autoencoders
scanning-probe-microscopy
fully-convolutional-networks
Created
2020-09-04
1,412 commits to master branch, last one 4 months ago
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
Created
2023-06-20
94 commits to main branch, last one 10 days ago
Automated 3D cell detection in very large images
Created
2020-01-17
733 commits to main branch, last one 17 days ago
PyTorch Connectomics: segmentation toolbox for EM connectomics
Created
2019-03-27
1,008 commits to master branch, last one 7 days ago
Read and write Neuroglancer datasets programmatically.
Created
2017-07-25
1,236 commits to master branch, last one 13 days ago
Visualize, share and annotate your large 3D images online
Created
2012-05-14
17,101 commits to master branch, last one 23 hours ago
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Created
2018-10-27
465 commits to master branch, last one about a month ago
A lightweight python module to interact with atlases for systems neuroscience
Created
2020-04-30
280 commits to main branch, last one 7 days ago
Automated 3D brain registration with support for multiple species and atlases.
Created
2020-05-26
210 commits to main branch, last one 21 hours ago
Axon/Myelin segmentation using Deep Learning
Created
2016-09-26
756 commits to master branch, last one about a month ago
A collection of tools for painting super-resolution images
Created
2016-10-27
2,296 commits to master branch, last one 20 days ago
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
Created
2022-03-20
127 commits to main branch, last one about a month ago
This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
Created
2020-08-06
1,489 commits to master branch, last one about a year ago
Loading and handling microscopy data in blender
Created
2023-10-03
164 commits to main branch, last one 6 days ago
Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3
Created
2020-02-03
71 commits to master branch, last one 4 months ago
Electron/X-ray ptychography and tomography/laminography
Created
2021-01-08
339 commits to main branch, last one 6 days ago
Python package for processing image-based profiling data
Created
2019-07-03
702 commits to main branch, last one 6 days ago
Self-supervised models for encoding protein localization patterns from microscopy images
Created
2021-04-27
87 commits to main branch, last one 7 months ago
Encoder-Decoder Cell and Nuclei segmentation models
Created
2022-01-22
320 commits to main branch, last one 8 months ago
python functions for simulating optical transfer functions
Created
2016-09-21
258 commits to master branch, last one 2 months ago
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
Created
2020-03-20
1,435 commits to master branch, last one about a year ago
Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
Created
2022-11-15
107 commits to main branch, last one 7 days ago
The Fluorescent Protein Database
Created
2017-11-20
1,808 commits to main branch, last one 3 months ago