31 results found Sort:

mahmoodlab
CLAM mahmoodlab
324
946
gpl-3.0
18
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
clam pathology tcga-data camelyon16 camelyon17 mahmoodlab deep-learning data-efficient histopathology digital-pathology whole-slide-imaging bioimage-informatics quantitative-pathology computational-pathology weakly-supervised-learning
Created 2020-04-01
119 commits to master branch, last one 2 months ago
mahmoodlab
HIPT mahmoodlab
83
474
other
11
Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
cvpr pytorch cvpr2022 deep-learning histopathology high-resolution transfer-learning pretrained-weights vision-transformer unsupervised-learning computational-pathology self-supervised-learning weakly-supervised-learning hierarchical-attention-networks
Created 2022-06-06
89 commits to master branch, last one 3 months ago
Dana-Farber-AIOS
pathml Dana-Farber-AIOS
81
371
gpl-2.0
12
Tools for computational pathology
pathml python pytorch research pathology microscopy deep-learning histopathology image-analysis machine-learning digital-pathology computational-pathology spatial-transcriptomics biomedical-image-processing fluorescence-microscopy-imaging
Created 2019-07-31
1,011 commits to master branch, last one 2 months ago
TissueImageAnalytics
tiatoolbox TissueImageAnalytics
71
338
other
8
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
python deep-learning histopathology image-analysis tissue-analysis machine-learning cell-segmentation digital-pathology cell-classification stain-normalization tissue-segmentation whole-slide-imaging medical-image-analysis computational-pathology
Created 2020-05-28
665 commits to develop branch, last one 3 days ago
binli123
dsmil-wsi binli123
84
326
mit
0
DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image
pytorch transformer deep-learning histopathology self-attention tumor-detection visiontransformer whole-slide-image whole-slide-imaging deep-neural-networks self-supervised-learning semi-supervised-learning multiple-instance-learning weakly-supervised-learning
Created 2020-11-05
131 commits to master branch, last one 3 months ago
mahmoodlab
PathomicFusion mahmoodlab
77
258
gpl-3.0
14
Fusing Histology and Genomics via Deep Learning - IEEE TMI
fusion genomics pathomic pathology mahmoodlab multimodal histopathology transcriptomics multimodal-network computational-pathogenomics
Created 2019-12-14
46 commits to master branch, last one about a year ago
jamesdolezal
slideflow jamesdolezal
38
229
gpl-3.0
17
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
python histology pathology deep-learning histopathology machine-learning whole-slide-imaging computational-pathology
Created 2019-09-13
2,697 commits to master branch, last one 3 months ago
mahmoodlab
UNI mahmoodlab
30
228
other
3
Towards a general-purpose foundation model for computational pathology - Nature Medicine
uni mass-100k pathology foundation mahmoodlab pathology-fm histopathology nature-medicine foundation-model pathology-dinov2 digital-pathology pathology-foundation uni-foundation-model quantitative-pathology computational-pathology pathology-self-supervised pathology-foundation-model
Created 2024-02-02
20 commits to main branch, last one 13 days ago
maduc7
Histopathology-Datasets maduc7
28
190
unknown
8
Ressources of histopathology datasets
datasets ressources awesome-list histopathology histology-images machine-learning histopathology-images
Created 2022-07-22
82 commits to main branch, last one about a month ago
mahmoodlab
NucleiSegmentation mahmoodlab
64
184
unknown
12
cGAN-based Multi Organ Nuclei Segmentation
gan cgan nuclei pathology segmentation histopathology
Created 2018-09-13
26 commits to master branch, last one 2 years ago
mahmoodlab
CONCH mahmoodlab
14
178
other
3
A vision-language foundation model for computational pathology - Nature Medicine
conch pathology mahmoodlab histopathology medical-imaging nature-medicine foundation-model bioimage-analysis digital-pathology health-informatics bioimage-informatics nlp-machine-learning quantitative-pathology computational-pathology vision-language-pathology
Created 2023-12-31
10 commits to main branch, last one 2 months ago
mahmoodlab
TOAD mahmoodlab
44
167
agpl-3.0
5
AI-based pathology predicts origins for cancers of unknown primary - Nature
cup deep toad histology pathology mahmoodlab wsi-images deep-learning histopathology cancer-research unknown-primary cancer-detection bioimage-analysis bioimage-informatics cancer-imaging-research
Created 2020-06-19
26 commits to master branch, last one 2 years ago
Richarizardd
Self-Supervised-ViT-Path Richarizardd
17
130
gpl-3.0
5
Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)
neurips pytorch deep-learning histopathology transfer-learning pretrained-weights vision-transformer unsupervised-learning computational-pathology self-supervised-learning weakly-supervised-learning
Created 2022-03-03
77 commits to master branch, last one 2 years ago
wisdomikezogwo
quilt1m wisdomikezogwo
9
119
mit
5
[NeurIPS 2023 Oral] Quilt-1M: One Million Image-Text Pairs for Histopathology.
vlm clip-model histopathology medical-dataset multimodal-datasets
Created 2023-06-07
9 commits to main branch, last one 5 months ago
MarvinLer
tcga_segmentation MarvinLer
35
114
agpl-3.0
2
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
wsi tcga miccai pathology tcga-data segmentation data-efficient histopathology medical-imaging image-segmentation tumor-segmentation whole-slide-imaging computational-pathology slide-image-segmentation multiple-instance-learning weakly-supervised-learning
Created 2020-04-07
36 commits to master branch, last one 2 years ago
ChongQingNoSubway
PDL ChongQingNoSubway
29
113
mit
23
Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "
histopathology tumor-detection whole-slide-image whole-slide-imaging histopathology-images multiple-instance-learning weakly-supervised-learning histopathology-image-analysis
Created 2023-08-19
34 commits to main branch, last one about a month ago
mahmoodlab
Patch-GCN mahmoodlab
29
106
gpl-3.0
4
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
gcn wsi pathology mahmoodlab wsi-images histopathology survival-prediction
Created 2021-05-21
37 commits to master branch, last one 5 months ago
EIDOSLAB
torchstain EIDOSLAB
20
105
mit
5
Stain normalization tools for histological analysis and computational pathology
numpy python pytorch tensorflow histopathology medical-imaging digital-pathology stain-normalization computational-pathology
Created 2020-12-22
188 commits to main branch, last one about a year ago
mahmoodlab
SISH mahmoodlab
26
93
gpl-3.0
4
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
fish vqvae histology pathology mahmoodlab wsi-images deep-learning histopathology image-retrieval bioimage-analysis image-search-engine bioimage-informatics
Created 2021-05-31
69 commits to main branch, last one about a year ago
AdalbertoCq
Pathology-GAN AdalbertoCq
20
90
unknown
8
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep...
gans pathology-gan histopathology digital-pathology representation-learning generative-adversarial-network
Created 2019-01-11
290 commits to master branch, last one 2 years ago
DIAGNijmegen
pathology-whole-slide-data DIAGNijmegen
24
84
apache-2.0
6
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
wsa wsd wsi wsm python iterator pathology deep-learning histopathology whole-slide-data whole-slide-mask whole-slide-image whole-slide-dataset whole-slide-imaging whole-slide-annotation computational-pathology
Created 2021-09-07
627 commits to main branch, last one 4 days ago
srinidhiPY
SSL_CR_Histo srinidhiPY
21
62
mit
5
Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.
camelyon16 breastpathq deep-learning histopathology digital-pathology annotation-efficient self-supervised-learning semi-supervised-learning teacher-student-training
Created 2021-02-04
141 commits to histo branch, last one 2 years ago
YashSharma
C2C YashSharma
12
59
mit
2
Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.
deep-learning histopathology whole-slide-imaging multiple-instance-learning weakly-supervised-learning
Created 2021-03-15
29 commits to main branch, last one 2 years ago
manuel-munoz-aguirre
PyHIST manuel-munoz-aguirre
13
55
gpl-3.0
3
A pipeline to segment tissue from the background in histological images
svs wsi histology segmentation histopathology image-segmentation histological-images computational-pathology
Created 2018-11-14
141 commits to master branch, last one 3 years ago
bianhao123
Mixed_supervision bianhao123
12
51
gpl-3.0
1
MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.
pytorch miccai2022 histopathology pytorch-lightning computational-pathology multiple-instance-learning
Created 2022-06-19
3 commits to master branch, last one 2 years ago
DIAGNijmegen
pathology-he-auto-augment DIAGNijmegen
7
50
apache-2.0
6
H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
deep-learning histopathology data-augmentation
Created 2021-03-16
77 commits to main branch, last one about a year ago
sebastianffx
stainlib sebastianffx
8
50
mit
3
Python 3 library for the augmentation & normalization of H&E images
pathology histopathology image-processing image-augmentation image-normalization computational-pathology
Created 2020-11-17
25 commits to main branch, last one about a year ago
lucasrla
wsi-preprocessing lucasrla
13
43
gpl-3.0
3
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
wsi fastai pyvips libvips pytorch openslide pathology preprocessing histopathology whole-slide-imaging
Created 2020-09-03
1 commits to master branch, last one 3 years ago
dazhangyu123
ACMIL dazhangyu123
6
39
mit
2
WSI classification
acmil bracs camelyon16 histopathology pathology-image digital-pathology whole-slide-image computational-pathology multiple-instance-learning weakly-supervised-learning
Created 2023-11-12
20 commits to main branch, last one 2 months ago
SBU-BMI
champkit SBU-BMI
3
37
apache-2.0
3
Benchmarking toolkit for patch-based histopathology image classification.
pytorch benchmark benchmarking deep-learning histopathology image-classification
Created 2022-06-06
22 commits to main branch, last one about a year ago