8 results found Sort:

computational-cell-analytics
micro-sam computational-cell-analytics
48
386
mit
7
Segment Anything for Microscopy
napari segmentation segment-anything cell-segmentation microscopy-images nuclei-segmentation mitochondria-segmentation
Created 2023-05-03
1,177 commits to master branch, last one about a month ago
seung-lab
cloud-volume seung-lab
48
141
bsd-3-clause
29
Read and write Neuroglancer datasets programmatically.
s3 gcs mesh cloud numpy matrix python tensor big-data skeletons microscopy serverless large-image connectomics neuroglancer chunked-image volumetric-data microscopy-images electron-microscopy biomedical-image-processing
Created 2017-07-25
1,347 commits to master branch, last one 21 hours ago
scalableminds
webknossos scalableminds
25
135
agpl-3.0
15
Visualize, share and annotate your large 3D images online
em microscopy connectomics neurobiology hacktoberfest reconstruction microscopy-images
Created 2012-05-14
17,390 commits to master branch, last one 10 hours ago
sakoho81
miplib sakoho81
24
74
other
7
A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
image-analysis fourier-analysis image-processing image-resolution image-restoration microscopy-images deconvolution-microscopy
Created 2018-12-20
159 commits to public branch, last one 3 years ago
guiwitz
microfilm guiwitz
5
70
other
6
Creating figures and animations for multi-channel images with a focus on microscopy.
plotting matplotlib microscopy-images
Created 2021-04-09
271 commits to master branch, last one about a month ago
mastodon-sc
mastodon mastodon-sc
20
70
bsd-2-clause
22
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
java imglib2 trackmate cell-lineage large-images bioimage-analysis microscopy-images tracking-algorithm interactive-analysis interactive-visualizations
Created 2014-05-06
3,249 commits to master branch, last one 15 days ago
constantinpape
elf constantinpape
18
50
mit
8
Utils and convenience functions for large-scale bio-image analysis.
multicut segmentation image-analysis 3d-segmentation lifted-multicut mutex-watershed microscopy-images bio-image-analysis affine-transformation
Created 2019-08-05
534 commits to master branch, last one about a month ago
yfukai
laptrack yfukai
4
49
bsd-3-clause
3
Particle tracking by solving linear assignment problem.
python3 microscopy-images tracking-by-detection linear-assignment-problem
Created 2021-07-26
1,108 commits to main branch, last one 27 days ago