7 results found Sort:

MouseLand
cellpose MouseLand
408
1.4k
bsd-3-clause
29
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
cell-biology segmentation cell-segmentation
Created 2020-02-01
1,038 commits to main branch, last one about a month ago
vanvalenlab
deepcell-tf vanvalenlab
99
431
other
16
Deep Learning Library for Single Cell Analysis
tensorflow cell-biology deep-learning instance-segmentation
Created 2018-05-16
421 commits to master branch, last one 3 months ago
nadeemlab
DeepLIIF nadeemlab
67
180
other
6
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
pytorch ai-ready datasets multiplex pathology stitching cell-biology segmentation deep-learning pathology-gan pathology-image super-resolution cell-segmentation digital-pathology image-segmentation multitask-learning whole-slide-imaging immunohistochemistry cloud-native-applications immunohistochemical-images
Created 2021-04-15
500 commits to main branch, last one 18 days ago
Lee-Gihun
MEDIAR Lee-Gihun
32
144
mit
5
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
monai pytorch biomedical miscroscopy cell-biology neurips-2022 multi-modality multi-resolution cell-segmentation vision-transformer pytorch-segmentation instance-segmentation pytorch-implementation
Created 2022-11-16
79 commits to main branch, last one 8 months ago
deweylab
CellO deweylab
13
65
mit
6
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
rna-seq cell-type ontologies cell-biology bioinformatics machine-learning single-cell-rna-seq computational-biology cell-type-classification
Created 2019-04-05
177 commits to master branch, last one about a year ago
andreariba
DeepCycle andreariba
7
41
gpl-3.0
4
Cell cycle inference in single-cell RNA-seq
rna-seq single-cell cell-biology deep-learning
Created 2021-03-09
50 commits to main branch, last one about a year ago
nadeemlab
ImPartial nadeemlab
3
35
other
5
Interactive deep learning whole-cell segmentation and thresholding using partial annotations
pytorch denoising interactive cell-biology segmentation deep-learning cell-segmentation instance-segmentation
Created 2021-05-08
244 commits to main branch, last one 2 months ago