aertslab / pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

Date Created 2018-03-07 (6 years ago)

Commits 670 (last one 5 months ago)

Stargazers 424 (3 this week)

Watchers 18 (0 this week)

Forks 179

License gpl-3.0

Ranking

RepositoryStats indexes 565,600 repositories, of these aertslab/pySCENIC is ranked #100,396 (82nd percentile) for total stargazers, and #121,523 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #16,636/111,362.

Other Information

aertslab/pySCENIC has 3 open pull requests on Github, 29 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 189 open issues and 342 closed issues.

There have been 47 releases, the latest one was published on 2022-11-21 (about a year ago) with the name 0.12.1.

Homepage URL: http://scenic.aertslab.org

All Topics

single-cell transcriptomics transcription-factors gene-regulatory-network

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66 commits on the default branch (master) since jan '22

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The primary language is Python but there's also others...

updated: 2024-09-28 @ 04:25am, id: 124243757 / R_kgDOB2fPLQ