Trending repositories for topic genomics
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Official git repository for Biopython (originally converted from CVS)
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Rapid standardisation and quality control of GWAS or QTL summary statistics
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
Rapid standardisation and quality control of GWAS or QTL summary statistics
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Official git repository for Biopython (originally converted from CVS)
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Official git repository for Biopython (originally converted from CVS)
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Python library to facilitate genome assembly, annotation, and comparative genomics
Scripts to download genomes from the NCBI FTP servers
MCHelper: An automatic tool to curate transposable element libraries
Portable solution to generate genome alignment chains using lastz
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Rapid standardisation and quality control of GWAS or QTL summary statistics
MCHelper: An automatic tool to curate transposable element libraries
Portable solution to generate genome alignment chains using lastz
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Rapid standardisation and quality control of GWAS or QTL summary statistics
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Benchmarks for classification of genomic sequences
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
An R package for creating Q-Q and manhattan plots from GWAS results
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
Python library to facilitate genome assembly, annotation, and comparative genomics
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Official git repository for Biopython (originally converted from CVS)
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
Scripts to download genomes from the NCBI FTP servers
MrBiomics: Modules & Recipes augment Bioinformatics for Multi-Omics Analyses
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
MCHelper: An automatic tool to curate transposable element libraries
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
Portable solution to generate genome alignment chains using lastz
Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
Official git repository for Biopython (originally converted from CVS)
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Scripts to download genomes from the NCBI FTP servers
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Python library to facilitate genome assembly, annotation, and comparative genomics
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
🌿: ABM & GIS for philological, archaeological, and anthropological data.
Portable solution to generate genome alignment chains using lastz
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
MCHelper: An automatic tool to curate transposable element libraries
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
Benchmarks for classification of genomic sequences
ClairS - a deep-learning method for long-read somatic small variant calling
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category