gustaveroussy / sopa

Technology-invariant pipeline for spatial omics analysis (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / ...) that scales to millions of cells

Date Created 2023-09-04 (about a year ago)

Commits 874 (last one 4 days ago)

Stargazers 123 (1 this week)

Watchers 7 (0 this week)

Forks 14

License bsd-3-clause

Ranking

RepositoryStats indexes 565,600 repositories, of these gustaveroussy/sopa is ranked #246,305 (56th percentile) for total stargazers, and #265,501 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #44,675/111,362.

gustaveroussy/sopa is also tagged with popular topics, for these it's ranked: pipeline (#204/427)

Other Information

gustaveroussy/sopa has Github issues enabled, there are 20 open issues and 70 closed issues.

There have been 19 releases, the latest one was published on 2024-09-17 (12 days ago) with the name v1.1.5.

Homepage URL: https://gustaveroussy.github.io/sopa/

All Topics

pipeline snakemake spatialdata spatial-omics generalization memory-management multiplexed-imaging spatial-transcriptomics

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Recent Commit History

874 commits on the default branch (master) since jan '22

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Languages

The only known language in this repository is Python

updated: 2024-09-30 @ 07:15am, id: 686996186 / R_kgDOKPK62g