gustaveroussy / sopa

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

Date Created 2023-09-04 (about a year ago)

Commits 876 (last one about a month ago)

Stargazers 141 (2 this week)

Watchers 7 (0 this week)

Forks 16

License bsd-3-clause

Ranking

RepositoryStats indexes 584,353 repositories, of these gustaveroussy/sopa is ranked #229,120 (61st percentile) for total stargazers, and #269,279 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #41,566/116,326.

gustaveroussy/sopa is also tagged with popular topics, for these it's ranked: pipeline (#184/437)

Other Information

gustaveroussy/sopa has 1 open pull request on Github, 38 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 29 open issues and 80 closed issues.

There have been 19 releases, the latest one was published on 2024-09-17 (2 months ago) with the name v1.1.5.

Homepage URL: https://gustaveroussy.github.io/sopa/

All Topics

pipeline snakemake spatialdata spatial-omics generalization memory-management multiplexed-imaging spatial-transcriptomics

Star History

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Watcher History

Github watchers over time, collection started in '23

Recent Commit History

876 commits on the default branch (master) since jan '22

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Issue History

Languages

The only known language in this repository is Python

updated: 2024-11-20 @ 04:02pm, id: 686996186 / R_kgDOKPK62g