6 results found Sort:

broadinstitute
Tangram broadinstitute
54
283
bsd-3-clause
12
Spatial alignment of single cell transcriptomic data.
visium scrna-seq snrna-seq spatial-data gene-expression computational-biology
Created 2020-08-21
299 commits to master branch, last one 2 years ago
LieberInstitute
spatialLIBD LieberInstitute
20
91
unknown
19
Code for the spatialLIBD R/Bioconductor package and shiny app
golem shiny rstats visium 10xgenomics spatiallibd bioconductor spatialexperiment spatial-transcriptomics
Created 2019-12-04
831 commits to devel branch, last one 5 days ago
LieberInstitute
HumanPilot LieberInstitute
31
78
unknown
17
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
brain dlpfc human rstats visium biorxiv analysis 10xgenomics spatial-transcriptomics
Created 2019-12-04
214 commits to master branch, last one 10 months ago
jfnavarro
st_pipeline jfnavarro
49
76
other
5
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
visium pipeline scrna-seq spatial-transcriptomics
Created 2016-07-10
883 commits to master branch, last one about a month ago
nf-core
spatialvi nf-core
21
59
mit
171
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
st visium nf-core rna-seq spatial nextflow pipeline workflow microscopy 10xgenomics single-cell 10x-genomics bioinformatics transcriptomics image-processing spatial-transcriptomics
Created 2022-02-23
708 commits to dev branch, last one 11 days ago
HaojiaWu
CellScopes.jl HaojiaWu
3
34
mit
3
A Julia package for single cell and spatial data analysis
visium xenium cartana merfish seqfish starmap data-viz slideseq scrna-seq scatac-seq julia-package bioinformatics single-cell-omics spatial-transcriptomics
Created 2022-12-26
1,005 commits to main branch, last one 6 months ago