nf-core / spatialvi

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Date Created 2022-02-23 (2 years ago)

Commits 668 (last one 27 days ago)

Stargazers 52 (0 this week)

Watchers 158 (0 this week)

Forks 19

License mit

Ranking

RepositoryStats indexes 585,332 repositories, of these nf-core/spatialvi is ranked #451,255 (23rd percentile) for total stargazers, and #9,675 for total watchers. Github reports the primary language for this repository as Nextflow, for repositories using this language it is ranked #58/77.

nf-core/spatialvi is also tagged with popular topics, for these it's ranked: image-processing (#902/1093), bioinformatics (#657/791), workflow (#601/716), pipeline (#360/438)

Other Information

nf-core/spatialvi has 1 open pull request on Github, 49 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 5 open issues and 26 closed issues.

Homepage URL: https://nf-co.re/spatialvi

All Topics

st visium nf-core rna-seq spatial nextflow pipeline workflow microscopy 10xgenomics single-cell 10x-genomics bioinformatics transcriptomics image-processing spatial-transcriptomics

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Recent Commit History

668 commits on the default branch (dev) since jan '22

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The primary language is Nextflow but there's also others...

updated: 2024-11-16 @ 02:36pm, id: 462899606 / R_kgDOG5dJlg