nf-core / spatialvi

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Date Created 2022-02-23 (2 years ago)

Commits 611 (last one about a month ago)

Stargazers 41 (0 this week)

Watchers 155 (0 this week)

Forks 13

License mit

Ranking

RepositoryStats indexes 534,551 repositories, of these nf-core/spatialvi is ranked #471,895 (12th percentile) for total stargazers, and #9,854 for total watchers. Github reports the primary language for this repository as Nextflow, for repositories using this language it is ranked #59/65.

nf-core/spatialvi is also tagged with popular topics, for these it's ranked: image-processing (#936/1005), bioinformatics (#671/726), workflow (#627/674), pipeline (#368/408)

Other Information

nf-core/spatialvi has Github issues enabled, there are 4 open issues and 23 closed issues.

Homepage URL: https://nf-co.re/spatialvi

All Topics

st visium nf-core rna-seq spatial nextflow pipeline workflow microscopy 10xgenomics single-cell 10x-genomics bioinformatics transcriptomics image-processing spatial-transcriptomics

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611 commits on the default branch (dev) since jan '22

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The primary language is Nextflow but there's also others...

updated: 2024-06-24 @ 12:07pm, id: 462899606 / R_kgDOG5dJlg