nf-core / spatialvi

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Date Created 2022-02-23 (3 years ago)

Commits 708 (last one 13 days ago)

Stargazers 59 (0 this week)

Watchers 177 (17 this week)

Forks 21

License mit

Ranking

RepositoryStats indexes 632,768 repositories, of these nf-core/spatialvi is ranked #439,580 (31st percentile) for total stargazers, and #8,366 for total watchers. Github reports the primary language for this repository as Nextflow, for repositories using this language it is ranked #53/88.

nf-core/spatialvi is also tagged with popular topics, for these it's ranked: image-processing (#894/1174), bioinformatics (#622/845), workflow (#588/757), pipeline (#333/458)

Other Information

nf-core/spatialvi has 1 open pull request on Github, 54 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 6 open issues and 28 closed issues.

Homepage URL: https://nf-co.re/spatialvi

All Topics

st visium nf-core rna-seq spatial nextflow pipeline workflow microscopy 10xgenomics single-cell 10x-genomics bioinformatics transcriptomics image-processing spatial-transcriptomics

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Recent Commit History

708 commits on the default branch (dev) since jan '22

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The primary language is Nextflow but there's also others...

updated: 2025-03-26 @ 01:25am, id: 462899606 / R_kgDOG5dJlg