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227

1.1k

mit

33

A Deep Learning Python Toolkit for Healthcare Applications.

healthcare data-mining medical-code clinical-data deep-learning preprocessing clinical-research electronic-health-record electronic-medical-record

Created 2020-08-03

742 commits to master branch, last one 10 months ago

clinical_quality_language cqframework

127

274

apache-2.0

52

Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM)...

cds cql cqm dqm hl7 ecqm fhir java fhir-path clinical-data clinical-trials clinical-research clinical-reasoning clinical-decision-support clinical-quality-language clinical-quality-measurement

Created 2014-08-26

2,574 commits to master branch, last one about a month ago

tableone tompollard

42

170

mit

9

Create "Table 1" for research papers in Python

table1 research tableone statistics research-paper clinical-research

Created 2017-05-15

552 commits to main branch, last one 2 months ago

NegBio ncbi-nlp

42

160

other

4

:newspaper: High-performance tool for negation and uncertainty detection in radiology reports

nlp clincal reports clincal-nlp clinical-notes clinical-research

Created 2017-12-15

140 commits to master branch, last one 2 years ago

clinical-trial-outcome-prediction futianfan

33

114

unknown

2

benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.

dataset benchmark drug-design therapeutics clinical-data deep-learning life-sciences clinical-trials drug-development machine-learning clinical-research benchmark-datasets dataset-generation graph-neural-networks clinical-research-data-warehouse

Created 2021-02-18

180 commits to main branch, last one about a year ago

SlicerRadiomics AIM-Harvard

50

109

bsd-3-clause

21

A Slicer extension to provide a GUI around pyradiomics

cancer imaging nciitcr nci-itcr 3d-slicer radiomics clinical-research quantitative-imaging

Created 2016-12-02

146 commits to master branch, last one 11 months ago

ClarityNLP ClarityNLP

42

107

mpl-2.0

16

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

nlp solr luigi nlpql docker mongodb phenotype phenotypes clinical-research clinical-phenotyping clinical-quality-language natural-language-processing

This repository has been archived (exclude archived)

Created 2018-03-28

2,072 commits to main branch, last one 12 months ago

cyclops VectorInstitute

13

81

other

9

A toolkit for evaluating and monitoring AI models in clinical settings

eicu-crd mimic-iv omop-cdm mimic-iii physionet data-drift evaluation healthcare clinical-data deep-learning drift-detection machine-learning model-monitoring clinical-research electronic-health-record clinical-decision-support electronic-medical-record

Created 2022-02-21

560 commits to main branch, last one 6 days ago

CompareM2 cmkobel

3

56

gpl-3.0

2

🦠📇 Microbial genomes-to-report pipeline

hpc pbs conda slurm archaea bacteria bioconda apptainer snakemake prokaryotes metagenomics bioinformatics clinical-research genomes-to-report microbial-genomics

Created 2019-12-10

1,967 commits to master branch, last one 18 days ago