11 results found Sort:

sunlabuiuc
PyHealth sunlabuiuc
207
952
mit
33
A Deep Learning Python Toolkit for Healthcare Applications.
healthcare data-mining medical-code clinical-data deep-learning preprocessing clinical-research electronic-health-record electronic-medical-record
Created 2020-08-03
742 commits to master branch, last one 4 months ago
cqframework
clinical_quality_language cqframework
121
261
apache-2.0
54
Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM)...
cds cql cqm dqm hl7 ecqm fhir java fhir-path clinical-data clinical-trials clinical-research clinical-reasoning clinical-decision-support clinical-quality-language clinical-quality-measurement
Created 2014-08-26
2,534 commits to master branch, last one 20 hours ago
tompollard
tableone tompollard
38
163
mit
9
Create "Table 1" for research papers in Python
table1 research tableone statistics research-paper clinical-research
Created 2017-05-15
550 commits to main branch, last one 2 months ago
ncbi-nlp
NegBio ncbi-nlp
41
155
other
5
:newspaper: High-performance tool for negation and uncertainty detection in radiology reports
nlp clincal reports clincal-nlp clinical-notes clinical-research
Created 2017-12-15
140 commits to master branch, last one 2 years ago
ClarityNLP
ClarityNLP ClarityNLP
42
106
mpl-2.0
17
An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
nlp solr luigi nlpql docker mongodb phenotype phenotypes clinical-research clinical-phenotyping clinical-quality-language natural-language-processing
This repository has been archived (exclude archived)
Created 2018-03-28
2,072 commits to main branch, last one 6 months ago
AIM-Harvard
SlicerRadiomics AIM-Harvard
48
104
bsd-3-clause
22
A Slicer extension to provide a GUI around pyradiomics
cancer imaging nciitcr nci-itcr 3d-slicer radiomics clinical-research quantitative-imaging
Created 2016-12-02
146 commits to master branch, last one 5 months ago
futianfan
clinical-trial-outcome-prediction futianfan
29
100
unknown
2
benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.
dataset benchmark drug-design therapeutics clinical-data deep-learning life-sciences clinical-trials drug-development machine-learning clinical-research benchmark-datasets dataset-generation graph-neural-networks clinical-research-data-warehouse
Created 2021-02-18
180 commits to main branch, last one about a year ago
VectorInstitute
cyclops VectorInstitute
11
73
other
8
Toolkit for evaluating and monitoring AI models in clinical settings
eicu-crd mimic-iv omop-cdm mimic-iii physionet data-drift evaluation healthcare clinical-data deep-learning drift-detection machine-learning model-monitoring clinical-research electronic-health-record clinical-decision-support electronic-medical-record
Created 2022-02-21
519 commits to main branch, last one 11 days ago
phoenixctms
ctsms phoenixctms
35
54
lgpl-2.1
9
Phoenix CTMS - the ultimative CTMS/PRS/CDMS.
edc mda cdms ctms ecrf jsf2 roster massmail inventory primefaces form-designer randomization query-designer study-protocol clinical-trials training-record clinical-research inclusion-criteria inventory-management clinical-trial-management-system
Created 2017-09-03
1,806 commits to master branch, last one 2 months ago
cmkobel
CompareM2 cmkobel
3
52
gpl-3.0
3
🦠📇 Microbial genomes-to-report pipeline
hpc pbs conda slurm archaea bacteria bioconda apptainer snakemake prokaryotes metagenomics bioinformatics clinical-research genomes-to-report microbial-genomics
Created 2019-12-10
1,783 commits to master branch, last one 4 days ago
jojojaeger
whisper-streamlit jojojaeger
16
43
other
2
this master thesis project is based on OpenAI Whisper with the goal to transcibe interviews
asr whisper clinical-research speaker-identification
Created 2022-05-12
148 commits to master branch, last one about a month ago