AlexandrovLab / SigProfilerExtractor

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Date Created 2018-08-30 (6 years ago)

Commits 458 (last one 11 days ago)

Stargazers 154 (0 this week)

Watchers 22 (0 this week)

Forks 52

License bsd-2-clause

Ranking

RepositoryStats indexes 595,856 repositories, of these AlexandrovLab/SigProfilerExtractor is ranked #218,171 (63rd percentile) for total stargazers, and #101,075 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #39,567/119,431.

AlexandrovLab/SigProfilerExtractor is also tagged with popular topics, for these it's ranked: bioinformatics (#271/814)

Other Information

AlexandrovLab/SigProfilerExtractor has Github issues enabled, there are 2 open issues and 212 closed issues.

There have been 5 releases, the latest one was published on 2024-12-10 (11 days ago) with the name v1.1.25.

All Topics

bioinformatics cancer-genomics somatic-variants mutation-analysis mutational-signatures

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135 commits on the default branch (master) since jan '22

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The only known language in this repository is Python

updated: 2024-12-11 @ 04:59pm, id: 146816984 / R_kgDOCMA_2A