AlexandrovLab / SigProfilerExtractor

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

Date Created 2018-08-30 (6 years ago)

Commits 461 (last one about a month ago)

Stargazers 156 (0 this week)

Watchers 21 (0 this week)

Forks 54

License bsd-2-clause

Ranking

RepositoryStats indexes 627,741 repositories, of these AlexandrovLab/SigProfilerExtractor is ranked #223,831 (64th percentile) for total stargazers, and #103,317 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #41,180/127,817.

AlexandrovLab/SigProfilerExtractor is also tagged with popular topics, for these it's ranked: bioinformatics (#281/842)

Other Information

AlexandrovLab/SigProfilerExtractor has Github issues enabled, there are 3 open issues and 215 closed issues.

There have been 6 releases, the latest one was published on 2025-02-13 (about a month ago) with the name v1.2.0.

All Topics

bioinformatics cancer-genomics somatic-variants mutation-analysis mutational-signatures

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138 commits on the default branch (master) since jan '22

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The only known language in this repository is Python

updated: 2025-03-17 @ 05:01pm, id: 146816984 / R_kgDOCMA_2A