6 results found Sort:

open2c
bioframe open2c
26
167
mit
12
Genomic interval operations on Pandas DataFrames
numpy pandas python genomics dataframes ngs-analysis spatial-join bioinformatics genomic-ranges genomic-intervals
Created 2016-10-03
671 commits to main branch, last one 9 days ago
harbourlab
SparK harbourlab
20
102
unknown
5
Publication quality NGS track plotting
igv ngs rna-seq chip-seq plotting ngs-analysis bedgraph-files
Created 2019-11-14
334 commits to master branch, last one 2 years ago
hyunhwan-jeong
SalmonTE hyunhwan-jeong
23
80
gpl-3.0
9
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
salmon pipeline ngs-analysis transposable-elements
Created 2017-08-01
93 commits to main branch, last one about a year ago
BU-ISCIII
iskylims BU-ISCIII
34
67
gpl-3.0
9
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
ngs lims ngs-data workflow ngs-analysis bioinformatics-analysis
Created 2018-05-10
2,953 commits to main branch, last one about a month ago
YichaoOU
HemTools YichaoOU
17
60
unknown
3
HemTools: a collection of NGS pipelines and bioinformatic analyses
r ngs bash python ngs-analysis hpc-applications data-visualization bioinformatics-pipeline
Created 2019-04-02
733 commits to master branch, last one about a month ago
JhuangLab
BioInstaller JhuangLab
13
56
other
5
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
installer ngs-analysis installer-script bioinformatics-analysis
Created 2017-03-15
247 commits to master branch, last one about a year ago