17 results found Sort:

ncbi-nlp
BioSentVec ncbi-nlp
96
556
other
17
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
bionlp pubmed fasttext sent2vec mimic-iii word-embeddings sentence-embeddings sentence-similarity natural-language-processing
Created 2018-09-19
30 commits to master branch, last one 2 years ago
ncbi-nlp
bluebert ncbi-nlp
76
538
other
23
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
bert pubmed mimic-iii bert-model language-model pubmed-abstracts natural-language-processing
Created 2019-06-06
61 commits to master branch, last one 2 years ago
naivenaive
EasyPubMed naivenaive
40
310
mit
7
EasyPubMed is an extension to make new PubMed easy to use
pubmed sci-hub easypubmed
Created 2020-06-22
180 commits to master branch, last one about a month ago
mkucej
i-librarian-free mkucej
28
225
gpl-3.0
9
I, Librarian - open-source version of a PDF managing SaaS.
doi ocr pdf php ieee nasa saas arxiv pubmed crossref groupware web-based officedocs pdf-viewer remote-work document-management research-and-development
Created 2020-04-07
296 commits to master branch, last one about a month ago
jonatasgrosman
findpapers jonatasgrosman
29
187
mit
2
Findpapers: A tool for helping researchers who are looking for related works
acm ieee arxiv paper bibtex papers pubmed scopus biorxiv crawler medrxiv scraper academic research scientific-papers systematic-review systematic-mapping academic-publishing scientific-publishing scientific-publications
Created 2020-08-07
205 commits to master branch, last one 3 months ago
jannisborn
paperscraper jannisborn
27
167
mit
9
Tools to scrape publication metadata from pubmed, arxiv, medrxiv and chemrxiv.
arxiv pubmed biorxiv medrxiv chemrxiv paperscraper
Created 2020-07-01
113 commits to master branch, last one 4 days ago
kermitt2
biblio-glutton kermitt2
14
114
unknown
7
A high performance bibliographic information service
doi hal pubmed openaccess metadata-api disambiguation reference-matching bibliographical-references
Created 2017-08-11
379 commits to master branch, last one 17 days ago
Rostlab
nalaf Rostlab
26
112
apache-2.0
13
NLP framework in python for entity recognition and relationship extraction
ml ner nlp bionlp pubmed python pubmed-parser pubmed-central relationship-extraction
Created 2015-03-28
1,975 commits to develop branch, last one 2 years ago
justinphan3110
SciFive justinphan3110
14
86
mit
7
SciFive: a text-text transformer model for biomedical literature
jax nlp pmc flax pubmed attention huggingface transformer pretrained-models transfer-learning biomedical-language
Created 2021-05-26
87 commits to main branch, last one about a year ago
amcrisan
Adjutant amcrisan
21
65
mit
10
Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents
r shiny pubmed summaries text-mining
Created 2017-12-12
70 commits to master branch, last one 4 years ago
krassowski
easy-entrez krassowski
6
62
lgpl-3.0
4
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
entrez pubmed eutilities meta-analysis pubmed-central gene-annotations entrez-eutilities literature-mining literature-search
Created 2020-06-14
113 commits to main branch, last one 7 months ago
KarelDO
BioDEX KarelDO
4
36
mit
3
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
nlp pubmed drug-safety pharmacovigilance biomedical-text-mining
Created 2023-04-18
125 commits to main branch, last one 4 months ago
tychos-ai
tychos-python tychos-ai
7
36
mit
2
Python library for the Tychos API. The data transformation layer for AI.
ai llm data arxiv pubmed pipeline
Created 2023-06-26
65 commits to main branch, last one 8 months ago
nfflow
pubmedflow nfflow
4
32
mit
2
Data Collection API for pubmed
nlp data pubmed python hacktoberfest machinelearning
Created 2022-06-26
59 commits to main branch, last one about a year ago
somewheresystems
dataclysm somewheresystems
2
31
apache-2.0
2
Pull high-quality, efficient embeddings for PubMed, arXiv and Wikipedia from Huggingface and use for local LLM inference/Retrieval Augmented Generation (RAG)
llm rag data arxiv pubmed augmented retrieval wikipedia generation mistral-7b huggingface transformers
Created 2023-12-28
22 commits to main branch, last one 3 months ago
rafsanlab
ScrapPaper rafsanlab
6
30
mpl-2.0
2
A web scrapping method to extract journal information from PubMed and Google Scholar using Python.
pubmed webscraper webscraping googlescholar bioinformatics literature-mining
Created 2022-03-07
20 commits to main branch, last one 7 months ago
tychos-ai
tychos-node tychos-ai
8
26
mit
2
Node.js library for the Tychos API. The data transformation layer for AI.
ai llm data arxiv pubmed pipeline
Created 2023-07-04
56 commits to main branch, last one 8 months ago