6 results found Sort:

widdowquinn
pyani widdowquinn
55
197
mit
12
Application and Python module for average nucleotide identity analyses of microbes.
ani taxonomy bioinformatics classification taxonomy-assignment average-nucleotide-identity
Created 2014-12-30
2,041 commits to master branch, last one about a month ago
bluenote-1577
sylph bluenote-1577
7
191
mit
3
ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
k-mer metagenomics sketching-algorithm taxonomic-classification average-nucleotide-identity
Created 2023-05-06
266 commits to main branch, last one 14 days ago
bluenote-1577
skani bluenote-1577
10
170
mit
5
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
rust metagenomics bioinformatics average-nucleotide-identity
Created 2022-11-14
302 commits to main branch, last one 4 months ago
refresh-bio
vclust refresh-bio
1
50
gpl-3.0
3
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
viruses clustering dereplication bacteriophages genome-sequence sequence-similarity taxonomic-classification average-nucleotide-identity
Created 2023-08-30
43 commits to main branch, last one about a month ago
jean-pierreBoth
gsearch jean-pierreBoth
7
43
mit
4
Approximate nearest neighbour search for microbial genomes based on hash metric
probminhash-similarity nearest-neighbor-search average-nucleotide-identity
Created 2021-09-27
449 commits to master branch, last one 10 days ago
raufs
skDER raufs
3
40
bsd-3-clause
1
skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.
genomics strain-clustering genome-dereplication representative-genome average-nucleotide-identity
Created 2023-07-22
148 commits to main branch, last one 23 days ago