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ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
Created
2023-05-06
273 commits to main branch, last one 9 days ago
Application and Python module for average nucleotide identity analyses of microbes.
Created
2014-12-30
2,041 commits to master branch, last one 2 months ago
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
Created
2022-11-14
302 commits to main branch, last one 5 months ago
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
Created
2023-08-30
47 commits to main branch, last one a day ago
Approximate nearest neighbour search for microbial genomes based on hash metric
Created
2021-09-27
459 commits to master branch, last one a day ago
skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.
Created
2023-07-22
150 commits to main branch, last one 2 days ago
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
Created
2023-02-02
90 commits to main branch, last one 15 days ago