nf-core / rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Date Created 2018-03-29 (6 years ago)

Commits 5,806 (last one 5 days ago)

Stargazers 942 (0 this week)

Watchers 157 (0 this week)

Forks 713

License mit

Ranking

RepositoryStats indexes 597,394 repositories, of these nf-core/rnaseq is ranked #54,306 (91st percentile) for total stargazers, and #9,804 for total watchers. Github reports the primary language for this repository as Nextflow, for repositories using this language it is ranked #1/79.

nf-core/rnaseq is also tagged with popular topics, for these it's ranked: workflow (#124/726), pipeline (#58/443)

Other Information

nf-core/rnaseq has 12 open pull requests on Github, 676 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 64 open issues and 610 closed issues.

There have been 35 releases, the latest one was published on 2024-12-20 (5 days ago) with the name nf-core/rnaseq v3.18.0 - Lithium Lynx.

Homepage URL: https://nf-co.re/rnaseq

All Topics

rna nf-core rna-seq nextflow pipeline workflow

Star History

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Recent Commit History

2,219 commits on the default branch (master) since jan '22

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Languages

The primary language is Nextflow but there's also others...

updated: 2024-12-23 @ 08:14pm, id: 127293091 / R_kgDOB5ZWow