nf-core / rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Date Created 2018-03-29 (7 years ago)

Commits 5,806 (last one 3 months ago)

Stargazers 1,011 (3 this week)

Watchers 177 (-1 this week)

Forks 747

License mit

Ranking

RepositoryStats indexes 636,587 repositories, of these nf-core/rnaseq is ranked #52,882 (92nd percentile) for total stargazers, and #8,374 for total watchers. Github reports the primary language for this repository as Nextflow, for repositories using this language it is ranked #1/89.

nf-core/rnaseq is also tagged with popular topics, for these it's ranked: workflow (#125/760), pipeline (#56/461)

Other Information

nf-core/rnaseq has 17 open pull requests on Github, 684 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 86 open issues and 623 closed issues.

There have been 35 releases, the latest one was published on 2024-12-20 (3 months ago) with the name nf-core/rnaseq v3.18.0 - Lithium Lynx.

Homepage URL: https://nf-co.re/rnaseq

All Topics

rna nf-core rna-seq nextflow pipeline workflow

Star History

Github stargazers over time

Watcher History

Github watchers over time, collection started in '23

Recent Commit History

2,219 commits on the default branch (master) since jan '22

Yearly Commits

Commits to the default branch (master) per year

Issue History

Languages

The primary language is Nextflow but there's also others...

updated: 2025-04-08 @ 11:49am, id: 127293091 / R_kgDOB5ZWow