nf-core / rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Date Created 2018-03-29 (6 years ago)

Commits 5,670 (last one 28 days ago)

Stargazers 920 (9 this week)

Watchers 156 (0 this week)

Forks 708

License mit

Ranking

RepositoryStats indexes 584,353 repositories, of these nf-core/rnaseq is ranked #54,970 (91st percentile) for total stargazers, and #9,848 for total watchers. Github reports the primary language for this repository as Nextflow, for repositories using this language it is ranked #1/77.

nf-core/rnaseq is also tagged with popular topics, for these it's ranked: workflow (#129/716), pipeline (#58/437)

Other Information

nf-core/rnaseq has 13 open pull requests on Github, 660 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 62 open issues and 604 closed issues.

There have been 34 releases, the latest one was published on 2024-10-24 (28 days ago) with the name nf-core/rnaseq v3.17.0 - Neon Newt.

Homepage URL: https://nf-co.re/rnaseq

All Topics

rna nf-core rna-seq nextflow pipeline workflow

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2,083 commits on the default branch (master) since jan '22

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Languages

The primary language is Nextflow but there's also others...

updated: 2024-11-20 @ 06:28pm, id: 127293091 / R_kgDOB5ZWow