Trending repositories for language Nextflow
Repository to host tool-specific module files for the Nextflow DSL2 community!
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
Repository to host tool-specific module files for the Nextflow DSL2 community!
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
Repository to host tool-specific module files for the Nextflow DSL2 community!
A single cell transcriptomics pipeline for QC, integration and making the data presentable
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
A single cell transcriptomics pipeline for QC, integration and making the data presentable
A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
Repository to host tool-specific module files for the Nextflow DSL2 community!
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A single cell transcriptomics pipeline for QC, integration and making the data presentable
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Repository to host tool-specific module files for the Nextflow DSL2 community!
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the ...
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the ...
A single cell transcriptomics pipeline for QC, integration and making the data presentable
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A comparative genomics workflow using Nextflow, conda, Julia and R
A single cell transcriptomics pipeline for QC, integration and making the data presentable
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Repository to host tool-specific module files for the Nextflow DSL2 community!
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
A single cell transcriptomics pipeline for QC, integration and making the data presentable
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
A comprehensive cancer DNA/RNA analysis and reporting pipeline
A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the ...
Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Nextflow pipeline to analyze PacBio HiFi full-length 16S data
A Nextflow workflow to generate lift over files for any pair of genomes
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Repository to host tool-specific module files for the Nextflow DSL2 community!