nextstrain / nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Date Created 2020-06-12 (4 years ago)
Commits 6,447 (last one 2 days ago)
Stargazers 224 (0 this week)
Watchers 20 (0 this week)
Forks 60
License mit
Ranking

RepositoryStats indexes 621,187 repositories, of these nextstrain/nextclade is ranked #171,245 (72nd percentile) for total stargazers, and #112,021 for total watchers. Github reports the primary language for this repository as Rust, for repositories using this language it is ranked #4,902/18,029.

nextstrain/nextclade is also tagged with popular topics, for these it's ranked: research (#212/538),  covid-19 (#91/315),  science (#108/286),  coronavirus (#43/137),  virus (#31/118),  covid19 (#30/114)

Other Information

nextstrain/nextclade has 21 open pull requests on Github, 924 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 110 open issues and 360 closed issues.

There have been 109 releases, the latest one was published on 2025-02-25 (2 days ago) with the name 3.10.2.

Homepage URL: https://clades.nextstrain.org

Star History

Github stargazers over time

250250200200150150100100505000Jul '20Jul '2020212021Jul '21Jul '2120222022Jul '22Jul '2220232023Jul '23Jul '2320242024Jul '24Jul '2420252025

Watcher History

Github watchers over time, collection started in '23

202019.519.5191918.518.5181817.517.5171716.516.5161615.515.5151520232023Feb '23Feb '23Apr '23Apr '23Jun '23Jun '23Aug '23Aug '23Oct '23Oct '23Dec '23Dec '23Feb '24Feb '24Apr '24Apr '24Jun '24Jun '24Aug '24Aug '24Oct '24Oct '24Dec '24Dec '24Feb '25Feb '25

Recent Commit History

3,406 commits on the default branch (master) since jan '22

3.5k3.5k3k3k2.5k2.5k2k2k1.5k1.5k1k1k50050000Jul '22Jul '2220232023Jul '23Jul '2320242024Jul '24Jul '2420252025

Yearly Commits

Commits to the default branch (master) per year

1.8k1.8k1.6k1.6k1.4k1.4k1.2k1.2k1k1k8008006006004004002002000020202020202120212022202220242024

Issue History

Total Issues
Open Issues
Closed Issues
500500450450400400350350300300250250200200150150100100505000Jul '20Jul '2020212021Jul '21Jul '2120222022Jul '22Jul '2220232023Jul '23Jul '2320242024Jul '24Jul '2420252025

Languages

The primary language is Rust but there's also others...

RustRustTypeScriptTypeScriptShellShellJavaScriptJavaScriptPythonPythonDockerfileDockerfileSCSSSCSSTeXTeXJupyter NotebookJupyter NotebookOtherOtherMDXMDX

updated: 2025-02-26 @ 01:10am, id: 271799467 / R_kgDOEDNUqw