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A collection of tools for Hi-C data analysis
Created
2018-03-29
540 commits to master branch, last one 2 months ago
A cool place to store your Hi-C
Created
2016-01-13
1,097 commits to master branch, last one 9 days ago
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
Created
2017-11-07
130 commits to master branch, last one 2 months ago
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like ma...
Created
2013-08-29
2,626 commits to master branch, last one 5 months ago
CUT&RUN and CUT&Tag data processing and analysis
Created
2020-09-04
293 commits to master branch, last one 2 months ago
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Created
2016-09-05
187 commits to main branch, last one about a year ago
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
Created
2022-10-12
89 commits to main branch, last one 9 months ago
dcHiC: Differential compartment analysis for Hi-C datasets
Created
2020-06-25
405 commits to master branch, last one 11 months ago
Chromosome polymer simulations and in silico capture experiments
Created
2019-03-30
333 commits to master branch, last one about a year ago