9 results found Sort:

A collection of tools for Hi-C data analysis
Created 2018-03-29
543 commits to master branch, last one 26 days ago
54
213
bsd-3-clause
14
A cool place to store your Hi-C
Created 2016-01-13
1,097 commits to master branch, last one 2 months ago
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
Created 2017-11-07
131 commits to master branch, last one about a month ago
CUT&RUN and CUT&Tag data processing and analysis
Created 2020-09-04
293 commits to master branch, last one 3 months ago
61
101
gpl-3.0
16
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like ma...
Created 2013-08-29
2,626 commits to master branch, last one 6 months ago
36
75
bsd-3-clause
7
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Created 2016-09-05
187 commits to main branch, last one about a year ago
10
69
unknown
3
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
Created 2022-10-12
89 commits to main branch, last one 11 months ago
10
66
mit
5
dcHiC: Differential compartment analysis for Hi-C datasets
Created 2020-06-25
405 commits to master branch, last one about a year ago
Chromosome polymer simulations and in silico capture experiments
Created 2019-03-30
333 commits to master branch, last one about a year ago