5 results found Sort:

open2c
cooler open2c
53
211
bsd-3-clause
14
A cool place to store your Hi-C
ngs hdf5 hi-c cooler python sparse genomics 3d-genome chromatin file-format bioinformatics contact-matrix
Created 2016-01-13
1,097 commits to master branch, last one about a month ago
4dn-dcic
hic2cool 4dn-dcic
7
67
mit
10
Lightweight converter between hic and cool contact matrices.
hi-c cooler juicer converter bioinformatics contact-matrices
Created 2017-01-26
217 commits to master branch, last one about a year ago
4dn-dcic
docker-4dn-hic 4dn-dcic
18
59
mit
8
Docker for 4DN Hi-C processing pipeline
bwa hi-c cooler docker juicer pairix pairsqc bioinformatics
Created 2017-03-03
903 commits to master branch, last one 5 years ago
XiaoTaoWang
HiC_pipeline XiaoTaoWang
20
55
gpl-3.0
6
An easy-to-use Hi-C data processing software supporting distributed computation.
hi-c arima pairs cooler python pipeline bioinformatics 4d-nucleome-network chromosome-conformation-capture
Created 2014-12-16
407 commits to master branch, last one 5 months ago
paulsengroup
hictk paulsengroup
1
28
mit
2
Blazing fast toolkit to work with .hic and .cool files
cxx hic hi-c cxx17 hictk cooler conversion cxx-library bioinformatics cli-application
Created 2023-06-07
1,715 commits to main branch, last one about a month ago