7 results found Sort:

mdozmorov
HiC_tools mdozmorov
124
549
mit
36
A collection of tools for Hi-C data analysis
hi-c 3d-genome chromatin
Created 2018-03-29
540 commits to master branch, last one 29 days ago
aidenlab
juicer aidenlab
183
418
mit
17
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
ngs hi-c genomics 3d-genome bioinformatics 3d-genome-browser
Created 2015-12-24
404 commits to main branch, last one 2 months ago
open2c
cooler open2c
50
207
bsd-3-clause
14
A cool place to store your Hi-C
ngs hdf5 hi-c cooler python sparse genomics 3d-genome chromatin file-format bioinformatics contact-matrix
Created 2016-01-13
1,085 commits to master branch, last one about a month ago
YaqiangCao
cLoops YaqiangCao
17
109
mit
15
Accurate and flexible loops calling tool for 3D genomic data.
ngs hi-c tool dbscan hichip python stripes chia-pet pipeline 3d-genome algorithm clustering sequencing example-data trac-looping loops-calling bioinformatics chromatin-loops chromatin-stripes chromatin-interaction
Created 2017-06-26
143 commits to master branch, last one 2 years ago
open2c
pairtools open2c
32
104
mit
11
Extract 3D contacts (.pairs) from sequencing alignments
ngs hi-c python 3d-genome pairs-file bioinformatics file-formatter
Created 2017-02-23
715 commits to master branch, last one 29 days ago
ma-compbio
Higashi ma-compbio
10
79
mit
6
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
3d-genome hypergraph single-cell machine-learning
Created 2020-12-11
321 commits to main branch, last one about a month ago
XiaoTaoWang
HiCLift XiaoTaoWang
5
67
other
3
A fast and efficient tool for converting chromatin interaction data between genome assemblies
hi-c liftover 3d-genome
Created 2021-01-23
35 commits to master branch, last one about a year ago