7 results found Sort:

mdozmorov
HiC_tools mdozmorov
117
514
mit
35
A collection of tools for Hi-C data analysis
hi-c 3d-genome chromatin
Created 2018-03-29
531 commits to master branch, last one 19 days ago
aidenlab
juicer aidenlab
181
399
mit
17
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
ngs hi-c genomics 3d-genome bioinformatics 3d-genome-browser
Created 2015-12-24
402 commits to main branch, last one about a year ago
open2c
cooler open2c
52
196
bsd-3-clause
14
A cool place to store your Hi-C
ngs hdf5 hi-c cooler python sparse genomics 3d-genome chromatin file-format bioinformatics contact-matrix
Created 2016-01-13
1,084 commits to master branch, last one 12 days ago
YaqiangCao
cLoops YaqiangCao
18
108
mit
15
Accurate and flexible loops calling tool for 3D genomic data.
ngs hi-c tool dbscan hichip python stripes chia-pet pipeline 3d-genome algorithm clustering sequencing example-data trac-looping loops-calling bioinformatics chromatin-loops chromatin-stripes chromatin-interaction
Created 2017-06-26
143 commits to master branch, last one 2 years ago
open2c
pairtools open2c
33
92
mit
11
Extract 3D contacts (.pairs) from sequencing alignments
ngs hi-c python 3d-genome pairs-file bioinformatics file-formatter
Created 2017-02-23
706 commits to master branch, last one 2 months ago
ma-compbio
Higashi ma-compbio
9
74
mit
6
single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
3d-genome hypergraph single-cell machine-learning
Created 2020-12-11
320 commits to main branch, last one 3 months ago
XiaoTaoWang
HiCLift XiaoTaoWang
4
60
other
2
A fast and efficient tool for converting chromatin interaction data between genome assemblies
hi-c liftover 3d-genome
Created 2021-01-23
35 commits to master branch, last one about a year ago