3DGenomes / TADbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

Date Created 2013-08-29 (11 years ago)

Commits 2,626 (last one 3 months ago)

Stargazers 100 (0 this week)

Watchers 17 (0 this week)

Forks 61

License gpl-3.0

Ranking

RepositoryStats indexes 579,555 repositories, of these 3DGenomes/TADbit is ranked #288,583 (50th percentile) for total stargazers, and #129,325 for total watchers. Github reports the primary language for this repository as Python, for repositories using this language it is ranked #53,242/115,123.

3DGenomes/TADbit is also tagged with popular topics, for these it's ranked: python (#12,678/21870), mapping (#205/311), 3d-models (#101/175)

Other Information

3DGenomes/TADbit has 1 open pull request on Github, 131 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 66 open issues and 188 closed issues.

There have been 5 releases, the latest one was published on 2020-10-17 (4 years ago) with the name TADbit 2020.

All Topics

ngs hi-c python mapping 3d-models chromatin

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26 commits on the default branch (master) since jan '22

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updated: 2024-09-15 @ 10:21am, id: 12459632 / R_kgDOAL4ecA