16 results found Sort:
- Filter by Primary Language:
- Python (6)
- Perl (2)
- R (2)
- Java (2)
- TypeScript (1)
- Julia (1)
- Jupyter Notebook (1)
- C++ (1)
- +
Rapid large-scale prokaryote pan genome analysis
Created
2013-04-18
930 commits to master branch, last one 2 years ago
SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.
Created
2016-05-13
27,692 commits to development branch, last one 7 days ago
Mathematical Modeling of Infectious Disease Dynamics
Created
2014-07-13
3,716 commits to main branch, last one a day ago
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Created
2009-09-30
5,443 commits to master branch, last one about a year ago
A tool to circularize genome assemblies
Created
2015-04-16
387 commits to master branch, last one about a year ago
Unified COVID-19 Dataset
Created
2020-06-10
883 commits to master branch, last one about a year ago
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Created
2011-11-01
2,418 commits to master branch, last one 5 months ago
Antimicrobial Resistance Identification By Assembly
Created
2015-02-11
1,797 commits to master branch, last one about a year ago
Get assembly statistics from FASTA and FASTQ files
Created
2014-04-04
36 commits to master branch, last one about a year ago
Infectious Disease Sequencing Platform
Created
2017-08-02
6,038 commits to main branch, last one 6 days ago
Simulation, visualization, and inference of individual level infectious disease models with Julia
Created
2015-05-07
280 commits to master branch, last one 2 years ago
Python3 scripts to manipulate FASTA and FASTQ files
Created
2013-09-06
299 commits to master branch, last one 3 years ago
This repository has no description...
Created
2015-11-12
396 commits to master branch, last one 3 years ago
Improve the quality of a denovo assembly by scaffolding and gap filling
Created
2012-08-15
384 commits to master branch, last one 4 years ago
de novo virus assembler of Illumina paired reads
Created
2014-04-30
299 commits to master branch, last one 3 years ago
Simulating epidemics using Python
Created
2020-06-18
660 commits to master branch, last one 11 months ago