pysam-developers / pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

Date Created 2014-02-05 (10 years ago)

Commits 2,303 (last one about a month ago)

Stargazers 792 (3 this week)

Watchers 47 (0 this week)

Forks 274

License mit

Ranking

RepositoryStats indexes 595,856 repositories, of these pysam-developers/pysam is ranked #63,992 (89th percentile) for total stargazers, and #44,810 for total watchers. Github reports the primary language for this repository as Cython, for repositories using this language it is ranked #11/109.

pysam-developers/pysam is also tagged with popular topics, for these it's ranked: python (#3,468/22324), bioinformatics (#38/814)

Other Information

pysam-developers/pysam has 13 open pull requests on Github, 325 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 273 open issues and 659 closed issues.

There have been 36 releases, the latest one was published on 2024-04-24 (8 months ago) with the name v0.22.1.

Homepage URL: https://pysam.readthedocs.io/en/latest/

All Topics

ngs htslib python bioinformatics

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261 commits on the default branch (master) since jan '22

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The primary language is Cython but there's also others...

updated: 2024-12-21 @ 11:54am, id: 16557526 / R_kgDOAPyl1g