pysam-developers / pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

Date Created 2014-02-05 (11 years ago)
Commits 2,320 (last one 12 days ago)
Stargazers 808 (2 this week)
Watchers 47 (0 this week)
Forks 277
License mit
Ranking

RepositoryStats indexes 618,350 repositories, of these pysam-developers/pysam is ranked #64,158 (90th percentile) for total stargazers, and #45,049 for total watchers. Github reports the primary language for this repository as Cython, for repositories using this language it is ranked #11/112.

pysam-developers/pysam is also tagged with popular topics, for these it's ranked: python (#3,492/22999),  bioinformatics (#39/834)

Other Information

pysam-developers/pysam has 11 open pull requests on Github, 326 pull requests have been merged over the lifetime of the repository.

Github issues are enabled, there are 270 open issues and 667 closed issues.

There have been 37 releases, the latest one was published on 2025-02-05 (17 days ago) with the name v0.23.0.

Homepage URL: https://pysam.readthedocs.io/en/latest/

Star History

Github stargazers over time

900900800800700700600600500500400400300300200200100100002015201520162016201720172018201820192019202020202021202120222022202320232024202420252025

Watcher History

Github watchers over time, collection started in '23

525251.551.5515150.550.5505049.549.5494948.548.5484847.547.5474720232023Feb '23Feb '23Apr '23Apr '23Jun '23Jun '23Aug '23Aug '23Oct '23Oct '23Dec '23Dec '23Feb '24Feb '24Apr '24Apr '24Jun '24Jun '24Aug '24Aug '24Oct '24Oct '24Dec '24Dec '24Feb '25Feb '25

Recent Commit History

278 commits on the default branch (master) since jan '22

300300250250200200150150100100505000Jul '22Jul '2220232023Jul '23Jul '2320242024Jul '24Jul '2420252025

Yearly Commits

Commits to the default branch (master) per year

50050045045040040035035030030025025020020015015010010050500020142014201520152016201620172017201820182019201920202020202120212022202220242024

Issue History

Total Issues
Open Issues
Closed Issues
1k1k900900800800700700600600500500400400300300200200100100002015201520162016201720172018201820192019202020202021202120222022202320232024202420252025

Languages

The primary language is Cython but there's also others...

CythonCythonPythonPythonCCMakefileMakefileShellShell

updated: 2025-02-18 @ 04:32am, id: 16557526 / R_kgDOAPyl1g