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78

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other

17

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

dsl ode sde julia sciml biology rate-laws simulation systems-biology reaction-network chemical-reactions gillespie-algorithm differential-equations systems-biology-simulation scientific-machine-learning

Created 2017-02-06

4,776 commits to master branch, last one a day ago

MomentClosure.jl augustinas1

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mit

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Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations

moments gene-network moment-closure systems-biology moment-equations gillespie-algorithm stochastic-processes chemical-reaction-networks

Created 2021-02-14

238 commits to main branch, last one 10 months ago

SBMLToolkit.jl SciML

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mit

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SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit

ode sbml julia sciml systems-biology gillespie-algorithm differential-equations chemical-reaction-networks quantitative-systems-pharmacology

Created 2021-06-16

520 commits to main branch, last one 9 days ago