clemgoub / dnaPipeTE

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

Date Created 2016-04-15 (8 years ago)

Commits 644 (last one about a year ago)

Stargazers 50 (0 this week)

Watchers 5 (0 this week)

Forks 11

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RepositoryStats indexes 579,555 repositories, of these clemgoub/dnaPipeTE is ranked #459,368 (21st percentile) for total stargazers, and #331,043 for total watchers. Github reports the primary language for this repository as Dockerfile, for repositories using this language it is ranked #1,411/1,774.

clemgoub/dnaPipeTE is also tagged with popular topics, for these it's ranked: bioinformatics (#666/786), pipeline (#361/432), assembly (#335/383), genomics (#275/310)

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All Topics

trinity assembly genomics pipeline annotations repeatmasker bioinformatics annotation-pipeline transposable-elements

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updated: 2024-10-15 @ 09:42am, id: 56310989 / R_kgDOA1s8zQ